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MH494197.1__AXC39142.1__X__00430

Bact-Vir

MH494197.1__AXC39142.1__X__00430

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Asteriusvirus› Escherichia_phage_CMSTMSU

TaxID: 2267248

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kptA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.66 45.0 3.36e-01 71.4% 27.0%
5anpA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 48.0 3.68e-01 100.0% 33.1%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 40.0 3.14e-01 71.4% 85.5%
4g68A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 46.0 3.31e-01 89.3% 58.5%
2rjoA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 43.0 3.22e-01 80.4% 49.7%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 41.0 3.32e-01 80.4% 54.5%
1eljA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.11e-01 87.5% 60.7%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 46.0 3.57e-01 100.0% 49.0%
2ljpA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 43.0 3.42e-01 87.5% 61.3%
4tveA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.43e-01 87.5% 61.5%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 38.0 2.68e-01 75.0% 42.4%
1sbpA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 38.0 2.98e-01 83.9% 57.0%
2zyoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 2.91e-01 91.1% 59.4%
1gep001 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 42.0 3.06e-01 92.9% 64.4%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.52 44.0 3.15e-01 100.0% 73.5%
4r6hA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 39.0 3.02e-01 91.1% 64.8%
2hpgC00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.52 38.0 2.45e-01 82.1% 80.2%
3i3vB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.02e-01 92.9% 56.8%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 35.0 3.01e-01 73.2% 48.1%
2pt7G01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 35.0 3.32e-01 78.6% 64.1%
2diyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.28e-01 89.3% 49.5%
4x7rA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 37.0 2.82e-01 87.5% 87.0%
5hsgA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 34.0 2.69e-01 71.4% 66.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119232 3105.1.1.1 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.66 45.0 3.36e-01 71.4% 27.0%
3949778 2007.1.6.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Bac_GDH_CD 0.62 52.0 3.70e-01 100.0% 60.5%
5009636 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.62 44.0 3.21e-01 76.8% 60.6%
4400197 7503.1.1.5 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › NLBH 0.60 41.0 3.19e-01 71.4% 54.4%
3561488 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.57 43.0 2.72e-01 87.5% 72.9%
3845321 7529.1.1.10 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › AKAP_110 0.55 40.0 3.25e-01 80.4% 69.7%
3388365 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 42.0 3.04e-01 96.4% 27.0%
4027911 2485.1.1.90 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C 0.53 41.0 3.27e-01 87.5% 46.4%
4422846 2007.1.14.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.52 35.0 2.68e-01 71.4% 77.2%
4974800 7512.1.1.32 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.52 39.0 2.90e-01 89.3% 78.9%
3200235 2003.1.1.120 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA 0.52 42.0 2.96e-01 96.4% 33.8%