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MH494197.1__AXC39172.1__X__00460
Bact-VirMH494197.1__AXC39172.1__X__00460
Identity
- Accession:
- MH494197 ↗
- Kingdom:
- phage
Quality
88.1
mean pLDDT
Taxonomy
TaxID: 2267248
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-91
Domain cluster:
rep: FN667788.1__CBJ93985.1__CPT_0176__00176__D71-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16898.11 best | TOPRIM_C | 38.5 | 1.70e-09 | 96.7% | 74.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 43.0 | 3.52e-01 | 78.0% | 83.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4878090 | 4012.1.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C | 0.71 | 58.0 | 5.32e-01 | 97.8% | 68.1% |
| 4406660 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.70 | 62.0 | 4.63e-01 | 100.0% | 41.2% |
| None | — | 0.68 | 61.0 | 4.53e-01 | 100.0% | 41.0% | |
| 4124102 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.68 | 61.0 | 4.49e-01 | 100.0% | 42.9% |
| 3164150 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.68 | 61.0 | 4.59e-01 | 100.0% | 45.3% |
| 3964707 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.66 | 58.0 | 4.40e-01 | 100.0% | 44.3% |
| 4878011 | 2006.1.3.21 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C | 0.64 | 53.0 | 4.05e-01 | 100.0% | 38.5% |
| 4100838 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.64 | 56.0 | 4.28e-01 | 100.0% | 42.9% |
| 3213306 | 2006.1.3.21 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C | 0.62 | 55.0 | 3.97e-01 | 100.0% | 34.4% |
| 3789608 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.62 | 53.0 | 3.89e-01 | 100.0% | 36.4% |
| 3551383 | 2006.1.3.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim,TOPRIM_C | 0.61 | 53.0 | 3.82e-01 | 100.0% | 32.8% |
| 4049320 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.53 | 36.0 | 3.05e-01 | 70.3% | 88.7% |
| 3563061 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.51 | 30.0 | 2.53e-01 | 92.3% | 31.2% |