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MH494197.1__AXC39173.1__X__00461
Bact-VirMH494197.1__AXC39173.1__X__00461
Identity
- Accession:
- MH494197 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 2267248
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-68
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3re1A01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 49.0 | 3.91e-01 | 96.7% | 37.7% |
| 3q7rA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 45.0 | 3.72e-01 | 98.4% | 37.3% |
| 1bgwA02 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 58.0 | 4.19e-01 | 100.0% | 36.8% |
| 1b6sA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 43.0 | 4.20e-01 | 95.1% | 61.4% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 46.0 | 4.01e-01 | 100.0% | 49.5% |
| 5lqdD01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.62 | 53.0 | 3.62e-01 | 100.0% | 50.8% |
| 5cheA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 44.0 | 3.35e-01 | 80.3% | 58.6% |
| 1ekjA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.60 | 47.0 | 3.34e-01 | 100.0% | 26.7% |
| 5k2mA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 39.0 | 3.37e-01 | 91.8% | 44.8% |
| 2o1sB03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 3.94e-01 | 98.4% | 90.6% |
| 4zwnB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 48.0 | 3.10e-01 | 98.4% | 51.8% |
| 5xb6A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 48.0 | 3.33e-01 | 100.0% | 82.8% |
| 4oqpA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 47.0 | 3.16e-01 | 96.7% | 62.6% |
| 3mcaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 3.65e-01 | 100.0% | 68.2% |
| 5t3oA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 42.0 | 3.30e-01 | 98.4% | 36.7% |
| 1dmgA00 | 3.40.1370.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L4; Chain: A; › Ribosomal protein L4/L1 | 0.56 | 41.0 | 3.11e-01 | 83.6% | 90.1% |
| 3bkwB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.26e-01 | 95.1% | 41.2% |
| 2carB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.56 | 46.0 | 3.38e-01 | 100.0% | 91.8% |
| 3cx3B01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 47.0 | 3.60e-01 | 98.4% | 75.3% |
| 7va8A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 48.0 | 3.20e-01 | 100.0% | 38.2% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 42.0 | 3.70e-01 | 100.0% | 54.6% |
| 2dgdA01 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 4.14e-01 | 100.0% | 69.6% |
| 1vp2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.54 | 44.0 | 3.29e-01 | 100.0% | 95.2% |
| 1y0bB01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 3.31e-01 | 96.7% | 33.9% |
| 4g4sP00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.54 | 45.0 | 3.24e-01 | 96.7% | 56.3% |
| 3bdiA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 45.0 | 3.22e-01 | 100.0% | 36.2% |
| 3l8dA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 47.0 | 3.28e-01 | 100.0% | 31.2% |
| 2hu8A02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 3.03e-01 | 100.0% | 26.4% |
| 3vasA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 44.0 | 2.90e-01 | 98.4% | 33.3% |
| 3h8vB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.10e-01 | 100.0% | 36.5% |
| 4rpoA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 41.0 | 3.35e-01 | 86.9% | 44.9% |
| 3vpbA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 3.16e-01 | 86.9% | 45.5% |
| 3looB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 2.93e-01 | 100.0% | 31.7% |
| 2aajA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 34.0 | 2.86e-01 | 70.5% | 88.4% |
| 7o71E01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 2.75e-01 | 100.0% | 21.8% |
| 4rjzA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 2.83e-01 | 91.8% | 27.9% |
| 8c0zE01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 3.34e-01 | 95.1% | 70.2% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059966 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.94 | 89.0 | 7.06e-01 | 100.0% | 55.5% |
| None | — | 0.93 | 86.0 | 5.91e-01 | 100.0% | 32.8% | |
| 4878011 | 2006.1.3.21 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOPRIM_C | 0.88 | 81.0 | 5.40e-01 | 100.0% | 28.6% |
| 1878568 | 2006.1.3.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim | 0.87 | 80.0 | 6.04e-01 | 100.0% | 46.3% |
| 4878089 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.84 | 76.0 | 7.03e-01 | 100.0% | 80.3% |
| 4657416 | 2006.1.3.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4,RecR_C | 0.70 | 54.0 | 4.45e-01 | 96.7% | 45.2% |
| 4980682 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.64 | 45.0 | 3.85e-01 | 100.0% | 43.8% |
| 3165324 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.61 | 42.0 | 4.04e-01 | 96.7% | 62.9% |
| 3648536 | 7579.1.1.13 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH | 0.61 | 50.0 | 3.42e-01 | 100.0% | 40.0% |
| 4589652 | 7522.1.1.5 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C_1 | 0.61 | 48.0 | 3.76e-01 | 100.0% | 40.0% |
| 2995274 | 2007.1.3.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › FleQ | 0.60 | 41.0 | 3.34e-01 | 98.4% | 35.8% |
| 3351782 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.60 | 53.0 | 3.50e-01 | 100.0% | 36.0% |
| 3374427 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.60 | 52.0 | 3.51e-01 | 100.0% | 43.9% |
| 3723089 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 44.0 | 3.30e-01 | 98.4% | 29.7% |
| 4948384 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.58 | 43.0 | 3.17e-01 | 98.4% | 26.8% |
| 4941678 | 7522.1.1.1 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C | 0.58 | 49.0 | 3.84e-01 | 93.4% | 53.1% |
| 5007769 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.58 | 51.0 | 3.40e-01 | 100.0% | 37.1% |
| 3412307 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.58 | 39.0 | 2.92e-01 | 98.4% | 27.7% |
| 3768565 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.57 | 49.0 | 3.91e-01 | 100.0% | 65.4% |
| 4048433 | 2007.1.3.16 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › KaiA_N | 0.57 | 44.0 | 3.45e-01 | 95.1% | 38.5% |
| 5036485 | 3688.1.1.0 ↗ | a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain | 0.57 | 37.0 | 3.55e-01 | 98.4% | 54.7% |
| 3546432 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.57 | 39.0 | 3.47e-01 | 70.5% | 95.6% |
| 1824343 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.57 | 48.0 | 3.10e-01 | 98.4% | 51.9% |
| 4987689 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.57 | 46.0 | 3.49e-01 | 100.0% | 97.2% |
| 4347488 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.56 | 46.0 | 3.35e-01 | 93.4% | 35.6% |
| 4319087 | 7510.1.1.3 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › FA_synthesis | 0.56 | 45.0 | 3.56e-01 | 100.0% | 58.7% |
| 3186522 | 2003.1.11.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like | 0.56 | 43.0 | 3.36e-01 | 98.4% | 37.1% |
| 4962460 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 41.0 | 4.04e-01 | 100.0% | 73.8% |
| 4943139 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.56 | 45.0 | 3.38e-01 | 100.0% | 98.4% |
| 3495202 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 47.0 | 3.44e-01 | 98.4% | 33.9% |
| 3960990 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.55 | 48.0 | 3.29e-01 | 100.0% | 36.8% |
| 4156602 | 2007.1.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain | 0.55 | 48.0 | 4.11e-01 | 100.0% | 96.0% |
| 3189425 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.55 | 46.0 | 3.20e-01 | 98.4% | 32.4% |
| 4987797 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.55 | 47.0 | 3.96e-01 | 100.0% | 97.3% |
| 4887051 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.54 | 44.0 | 3.34e-01 | 100.0% | 95.1% |
| 4986605 | 7518.1.1.6 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_A | 0.54 | 47.0 | 3.70e-01 | 96.7% | 66.9% |
| 4553260 | 2003.1.1.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_Gly3P_dh_N | 0.54 | 45.0 | 3.50e-01 | 98.4% | 89.3% |
| 2050056 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.54 | 47.0 | 3.96e-01 | 100.0% | 60.4% |
| 3352228 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.54 | 46.0 | 3.10e-01 | 100.0% | 94.1% |
| 4525761 | 874.1.1.1 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge | 0.54 | 39.0 | 2.29e-01 | 78.7% | 10.2% |
| 3841808 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.53 | 44.0 | 3.68e-01 | 100.0% | 51.8% |
| 3595861 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.53 | 45.0 | 2.81e-01 | 100.0% | 29.9% |
| 5029833 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.53 | 39.0 | 3.25e-01 | 100.0% | 42.5% |
| 4994002 | 2007.1.8.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 | 0.52 | 43.0 | 3.81e-01 | 98.4% | 62.4% |
| 4930312 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.52 | 42.0 | 3.02e-01 | 98.4% | 94.3% |
| 5054101 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.52 | 42.0 | 3.15e-01 | 100.0% | 96.3% |
| 3720675 | 2003.1.11.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like | 0.52 | 41.0 | 3.32e-01 | 98.4% | 41.4% |
| 4985190 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.51 | 43.0 | 3.02e-01 | 100.0% | 27.6% |
| 3932423 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.51 | 44.0 | 3.01e-01 | 100.0% | 43.9% |