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MH494197.1__AXC39300.1__X__00588

Bact-Vir

MH494197.1__AXC39300.1__X__00588

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Asteriusvirus› Escherichia_phage_CMSTMSU

TaxID: 2267248

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-73
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07230.17 best Portal_T4 43.9 1.90e-11 100.0% 15.8%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ll7A01 1.10.10.1110 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Methyltransferase PG1098, N-terminal domain 0.65 30.0 3.04e-01 92.8% 43.1%
7bgi701 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.62 43.0 3.36e-01 73.9% 50.9%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 47.0 3.55e-01 82.6% 76.5%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 38.0 3.15e-01 100.0% 33.1%
3cqcA00 1.20.190.50 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.59 46.0 3.16e-01 87.0% 23.9%
7sf2A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 43.0 2.81e-01 78.3% 34.8%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.97e-01 88.4% 59.8%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 39.0 2.99e-01 75.4% 79.1%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.88e-01 88.4% 56.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 3.80e-01 88.4% 54.5%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.76e-01 87.0% 55.5%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 33.0 2.80e-01 100.0% 37.8%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.54 44.0 3.30e-01 91.3% 43.2%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 41.0 3.22e-01 82.6% 98.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.53 44.0 4.19e-01 92.8% 89.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940784 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.60 46.0 3.98e-01 87.0% 52.7%
3712717 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.58 42.0 3.31e-01 78.3% 98.7%
3338069 192.29.1.104 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 0.56 43.0 3.29e-01 87.0% 32.8%
4013057 109.4.1.658 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tti2 0.56 44.0 2.69e-01 87.0% 13.8%
3579769 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 42.0 3.37e-01 88.4% 40.0%
3546316 3922.1.1.186 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › WWC1 0.55 48.0 3.59e-01 100.0% 59.5%
3899656 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.55 47.0 3.11e-01 100.0% 82.2%
3263287 150.7.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.54 41.0 3.87e-01 87.0% 67.1%
3910599 604.1.1.7 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 0.54 45.0 3.84e-01 92.8% 63.5%
3420307 192.8.1.248 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.54 42.0 2.82e-01 87.0% 26.7%
3988581 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.54 43.0 3.98e-01 89.9% 93.3%
3695339 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 46.0 3.62e-01 100.0% 92.3%
3172733 630.1.1.4 ↗ a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF28952 0.53 42.0 3.38e-01 87.0% 42.9%
3224283 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 3.27e-01 98.6% 97.4%
3797019 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 37.0 2.53e-01 91.3% 18.0%
3212939 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 40.0 3.17e-01 87.0% 39.4%
3959227 150.7.1.2 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › EspB_PE 0.51 39.0 3.70e-01 91.3% 70.6%
3412603 3567.1.1.154 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF30089 0.50 41.0 3.44e-01 92.8% 70.4%