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MH494197.1__AXC39335.1__X__00623

Bact-Vir

MH494197.1__AXC39335.1__X__00623

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.60 40.0 3.54e-01 100.0% 45.2%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 40.0 3.37e-01 100.0% 40.2%
3olqA00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 48.0 3.13e-01 100.0% 19.9%
3dl2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 37.0 2.89e-01 90.2% 29.5%
1jlcB04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 36.0 3.62e-01 90.2% 70.3%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.51 46.0 3.69e-01 100.0% 52.9%
3e9nA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 36.0 2.66e-01 91.8% 25.9%
4hea600 3.40.50.12280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 36.0 2.79e-01 80.3% 87.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716016 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 41.0 3.52e-01 78.7% 80.0%
4186957 192.29.1.164 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › RRP36 0.55 39.0 3.26e-01 75.4% 44.3%
3690042 252.1.1.5 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › Clr2_transil 0.52 43.0 3.63e-01 98.4% 51.8%
3806710 148.1.3.211 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 0.52 37.0 3.38e-01 75.4% 54.1%
4865265 3003.1.1.3 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM9_N 0.51 43.0 3.70e-01 100.0% 64.8%
3274016 101.1.2.393 alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.51 41.0 3.89e-01 96.7% 96.2%
3695971 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.50 42.0 2.94e-01 91.8% 38.4%
D2 medium residues 62-126
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.62 43.0 4.04e-01 72.3% 85.2%
1xu0A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.54 37.0 3.33e-01 73.8% 60.8%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 46.0 3.26e-01 100.0% 48.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487367 10.12.1.51 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.57 39.0 2.50e-01 70.8% 80.6%
3217700 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.53 40.0 3.38e-01 81.5% 94.5%