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MH494197.1__AXC39340.1__X__00628

Bact-Vir

MH494197.1__AXC39340.1__X__00628

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Asteriusvirus› Escherichia_phage_CMSTMSU

TaxID: 2267248

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-116
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 27.0 3.21e-01 72.6% 69.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4283619 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.56 33.0 3.11e-01 96.2% 47.2%
3933335 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 42.0 2.68e-01 91.5% 30.5%
D2 medium residues 117-189
PDB
Domain cluster: rep: NC_021795.1__YP_008241376.1__Phi17-1_gp60__00060__D1-69
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.83 53.0 6.08e-01 72.6% 87.3%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 49.0 3.65e-01 80.8% 66.8%
3g7kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.65 49.0 3.61e-01 80.8% 46.0%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 45.0 3.65e-01 79.5% 43.6%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 46.0 3.59e-01 78.1% 67.1%
4oagB02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.62 44.0 3.32e-01 75.3% 93.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 48.0 4.14e-01 86.3% 71.1%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 43.0 3.84e-01 75.3% 78.7%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 45.0 4.02e-01 83.6% 74.1%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 43.0 3.65e-01 83.6% 64.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 42.0 3.22e-01 80.8% 44.7%
2nutB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 42.0 2.99e-01 80.8% 51.7%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 43.0 3.48e-01 83.6% 54.1%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 44.0 2.71e-01 91.8% 15.5%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.55 38.0 4.00e-01 74.0% 100.0%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.54 39.0 4.05e-01 76.7% 100.0%
3fetA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 40.0 3.13e-01 82.2% 93.3%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.53 38.0 3.98e-01 79.5% 100.0%
4l2iA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 3.08e-01 91.8% 92.7%
3g7nB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.64e-01 80.8% 42.0%
4dmgA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 38.0 3.84e-01 82.2% 98.6%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.81e-01 80.8% 86.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.86 52.0 6.50e-01 72.6% 100.0%
3177767 2006.1.1.27 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 0.72 60.0 4.32e-01 90.4% 85.4%
3474295 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.68 53.0 3.66e-01 83.6% 55.0%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.64 46.0 3.75e-01 76.7% 56.4%
3875076 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 51.0 4.09e-01 90.4% 62.8%
3477642 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 48.0 4.06e-01 83.6% 87.5%
3995595 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 45.0 3.71e-01 78.1% 53.3%
3935342 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 45.0 3.91e-01 78.1% 62.6%
3421553 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 42.0 3.56e-01 72.6% 78.4%
3518153 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.61 44.0 3.88e-01 78.1% 77.3%
3502260 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.60 45.0 3.83e-01 80.8% 68.0%
3518947 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.60 47.0 4.02e-01 84.9% 77.5%
3890372 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 46.0 4.00e-01 82.2% 73.6%
3508120 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.58 43.0 3.75e-01 79.5% 73.9%
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.58 31.0 3.70e-01 75.3% 78.0%
3509348 214.1.1.15 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063, DUF7145 0.58 49.0 3.32e-01 98.6% 73.3%
3623273 101.1.2.712 ↗ alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.57 46.0 3.16e-01 89.0% 65.1%
4656410 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.57 42.0 3.98e-01 78.1% 76.4%
165237 286.1.1.3 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.57 44.0 3.23e-01 84.9% 71.0%
3513933 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.55 41.0 3.49e-01 80.8% 64.6%
3506774 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.54 41.0 3.57e-01 83.6% 99.2%
3973080 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.54 40.0 3.58e-01 80.8% 99.1%
3508119 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.54 39.0 3.40e-01 79.5% 68.3%
3509350 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.53 41.0 3.43e-01 84.9% 67.2%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.53 40.0 3.48e-01 86.3% 67.7%
5067001 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.53 39.0 2.92e-01 79.5% 89.7%
3190369 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 37.0 3.34e-01 74.0% 67.6%
4861411 5.1.4.58 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.53 37.0 2.47e-01 74.0% 40.1%
4243248 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.52 41.0 2.89e-01 89.0% 50.2%
3511269 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.50 38.0 3.36e-01 86.3% 69.2%