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MH494197.1__AXC39434.1__X__00722

Bact-Vir

MH494197.1__AXC39434.1__X__00722

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00293.35 best NUDIX 41.7 1.60e-10 100.0% 28.4%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.81 73.0 5.37e-01 100.0% 46.6%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 72.0 5.34e-01 100.0% 47.3%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 72.0 5.03e-01 100.0% 41.5%
5anvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 72.0 5.10e-01 100.0% 39.2%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 71.0 5.31e-01 100.0% 48.9%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 70.0 5.25e-01 100.0% 45.0%
3o8sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 67.0 5.02e-01 100.0% 42.5%
3gg6A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 67.0 4.87e-01 100.0% 43.1%
3edsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 67.0 4.93e-01 100.0% 40.6%
5qoqA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 66.0 4.76e-01 100.0% 43.0%
2kdvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 65.0 4.63e-01 100.0% 37.2%
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 65.0 4.82e-01 100.0% 49.3%
4hfqA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 64.0 4.74e-01 100.0% 41.7%
5zrcA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 65.0 4.93e-01 100.0% 48.4%
3grnA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 65.0 4.78e-01 100.0% 46.4%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 63.0 4.65e-01 100.0% 43.2%
3j7ye00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 62.0 4.69e-01 100.0% 46.3%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 64.0 4.67e-01 100.0% 45.3%
4ktbA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 62.0 4.46e-01 100.0% 43.8%
1q33A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 62.0 4.39e-01 100.0% 54.4%
5deqA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 63.0 4.67e-01 100.0% 46.0%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 63.0 4.80e-01 100.0% 46.4%
2azwA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 63.0 4.61e-01 100.0% 40.4%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 64.0 4.70e-01 100.0% 48.2%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.70 49.0 3.93e-01 73.6% 90.4%
1ryaA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 55.0 4.04e-01 100.0% 39.4%
5swvC02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.63 55.0 4.10e-01 100.0% 87.5%
5mswA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.61 49.0 4.06e-01 86.8% 76.1%
3ps9A03 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.58 46.0 3.42e-01 90.6% 93.3%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.58 39.0 3.62e-01 71.7% 55.7%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 44.0 3.17e-01 96.2% 63.2%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 47.0 4.27e-01 90.6% 84.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.29e-01 86.8% 71.1%
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.33e-01 100.0% 91.1%
4gnrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 43.0 3.13e-01 96.2% 50.2%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.54 43.0 3.94e-01 86.8% 84.5%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.54 44.0 3.52e-01 90.6% 44.9%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 2.77e-01 92.5% 92.0%
3gzsA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 2.53e-01 94.3% 60.2%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.53 42.0 3.73e-01 92.5% 68.3%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 41.0 2.93e-01 90.6% 85.1%
1tzlA02 3.30.1920.50 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.51 36.0 3.45e-01 71.7% 69.4%
3kc2A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 43.0 3.06e-01 96.2% 39.0%
3zh5A00 2.40.128.710 Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E 0.51 38.0 2.86e-01 79.2% 75.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740739 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.83 74.0 4.98e-01 100.0% 32.1%
4995185 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 74.0 5.47e-01 100.0% 44.6%
3613043 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 74.0 4.73e-01 100.0% 28.9%
3261242 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 73.0 4.90e-01 100.0% 35.8%
5025956 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 73.0 5.21e-01 100.0% 44.0%
3682777 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 72.0 5.02e-01 100.0% 38.2%
5035952 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 74.0 5.15e-01 100.0% 41.9%
3665729 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 71.0 4.86e-01 100.0% 44.3%
3941241 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.80 71.0 5.25e-01 100.0% 45.2%
3708370 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 72.0 4.83e-01 100.0% 38.9%
3410697 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.80 71.0 4.72e-01 100.0% 43.9%
4878958 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 67.0 5.06e-01 94.3% 48.8%
3594400 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.79 72.0 4.77e-01 100.0% 44.6%
3968000 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 71.0 5.20e-01 100.0% 48.9%
4969976 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 66.0 5.00e-01 92.5% 42.5%
3944800 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 71.0 5.24e-01 100.0% 46.9%
4429837 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 70.0 4.92e-01 100.0% 38.1%
4937802 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 70.0 5.21e-01 100.0% 49.2%
3278000 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 70.0 4.56e-01 100.0% 31.5%
3588992 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 68.0 5.04e-01 100.0% 43.0%
3407467 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 68.0 4.76e-01 100.0% 35.9%
3276905 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 68.0 4.49e-01 100.0% 44.7%
2120699 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 67.0 4.99e-01 100.0% 48.6%
3970070 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.76 68.0 4.97e-01 100.0% 42.9%
4937960 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 68.0 5.10e-01 100.0% 48.8%
4937324 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 67.0 4.97e-01 100.0% 46.7%
4927145 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 65.0 4.78e-01 100.0% 42.1%
4031749 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 66.0 4.98e-01 100.0% 48.0%
3777810 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 66.0 5.33e-01 100.0% 65.0%
1400405 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.73 62.0 4.69e-01 100.0% 46.3%
1018902 221.4.1.11 a+b two layers › beta-Grasp › Nudix › Nudix › DUF4916 0.72 62.0 4.46e-01 100.0% 43.8%
1124600 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 64.0 4.69e-01 100.0% 48.6%
5058152 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 63.0 4.72e-01 98.1% 46.9%
1161872 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 63.0 5.61e-01 100.0% 76.0%
3795846 221.4.1.8 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 0.68 57.0 4.41e-01 100.0% 52.3%
3631621 2484.1.1.24 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 47.0 3.31e-01 75.5% 59.4%
3917273 70.3.1.11 beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.65 44.0 2.72e-01 71.7% 53.4%
4431299 523.1.1.1 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.64 53.0 4.47e-01 92.5% 56.7%
3353301 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.64 43.0 2.75e-01 71.7% 53.7%
3554465 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.63 52.0 4.79e-01 92.5% 90.0%
4296904 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.62 52.0 4.65e-01 92.5% 84.0%
4389819 101.1.1.8 alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.62 51.0 4.13e-01 92.5% 59.0%
4043361 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.60 50.0 2.97e-01 94.3% 65.7%
2665501 235.1.1.6 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.59 40.0 2.84e-01 96.2% 21.3%
3621628 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.59 48.0 3.21e-01 98.1% 22.9%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.63e-01 96.2% 81.8%
4886142 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.58 47.0 2.83e-01 94.3% 61.2%
4277752 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.57 48.0 4.09e-01 100.0% 97.9%
3509218 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.55 42.0 3.61e-01 81.1% 89.4%
4969988 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.55 46.0 3.29e-01 98.1% 96.0%
1144716 3806.1.1.1 alpha complex topology › Carboxysomal shell beta carbonic anhydrase N-terminal domain › Carboxysomal shell beta carbonic anhydrase N-terminal domain › Carboxysomal shell beta carbonic anhydrase N-terminal domain › CsoSCA_N 0.54 44.0 3.52e-01 90.6% 44.9%
3271772 70.3.1.11 beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.54 47.0 2.96e-01 98.1% 49.5%
3224656 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.53 44.0 3.52e-01 92.5% 50.0%
3706618 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.53 41.0 3.65e-01 96.2% 57.3%
3651096 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.52 43.0 2.69e-01 94.3% 53.8%
5078921 4093.1.1.1 a+b three layers › CofE-like › CofE-like › CofE-like › F420_ligase 0.52 43.0 2.97e-01 92.5% 36.8%
3211024 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.51 41.0 3.45e-01 96.2% 76.2%
3923606 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 41.0 3.17e-01 100.0% 55.2%