←Back to structures

MH509441.1__AXH46814.1__SEA_ACOLYTE_71__00070

Bact-Vir

MH509441.1__AXH46814.1__SEA_ACOLYTE_71__00070

Identity

Accession:
MH509441 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pukovnikvirus› Mycobacterium_phage_Acolyte

TaxID: 2250290

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 6.41e-01 97.1% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 6.44e-01 100.0% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 6.23e-01 100.0% 95.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 4.68e-01 90.0% 98.5%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.06e-01 92.9% 50.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 32.0 3.91e-01 75.7% 81.8%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.60 41.0 3.70e-01 72.9% 76.5%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 3.46e-01 95.7% 42.1%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.58 43.0 3.86e-01 77.1% 91.6%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 42.0 3.50e-01 78.6% 89.8%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 3.64e-01 87.1% 93.1%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 39.0 3.37e-01 72.9% 84.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 45.0 2.90e-01 88.6% 28.7%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 3.98e-01 95.7% 56.4%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 45.0 4.66e-01 95.7% 97.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.81e-01 97.1% 97.2%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.55 47.0 3.30e-01 98.6% 72.4%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.79e-01 87.1% 94.4%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 41.0 3.17e-01 85.7% 66.5%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.92e-01 91.4% 79.6%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.50e-01 77.1% 89.8%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.53 45.0 3.13e-01 100.0% 63.9%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 37.0 3.14e-01 75.7% 81.6%
1rm6A03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 36.0 2.98e-01 72.9% 66.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.86e-01 90.0% 91.9%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.79e-01 100.0% 81.7%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.81e-01 90.0% 50.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.50 40.0 3.53e-01 94.3% 78.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 66.0 6.88e-01 97.1% 96.9%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.73 64.0 6.42e-01 100.0% 94.3%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.69 63.0 6.20e-01 100.0% 93.3%
3447043 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 35.0 4.39e-01 70.0% 100.0%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.17e-01 100.0% 90.6%
4226251 375.1.1.252 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.62 43.0 4.60e-01 91.4% 83.3%
3253266 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.68e-01 100.0% 75.2%
4768540 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.61 41.0 2.89e-01 70.0% 53.7%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 49.0 4.96e-01 90.0% 88.6%
3781083 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 47.0 2.94e-01 91.4% 22.7%
3489979 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.27e-01 81.4% 32.2%
5010129 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 39.0 4.29e-01 78.6% 87.3%
3666058 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.58 40.0 3.69e-01 74.3% 90.5%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.57 45.0 3.92e-01 91.4% 74.2%
3790766 220.1.1.151 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.57 46.0 3.50e-01 88.6% 75.2%
3770802 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 48.0 4.33e-01 100.0% 94.1%
3728712 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.56 43.0 2.63e-01 85.7% 21.8%
3485974 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.66e-01 94.3% 50.0%
3925915 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.55 38.0 4.28e-01 81.4% 100.0%
3689675 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 39.0 3.70e-01 75.7% 97.6%
3811908 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 48.0 3.87e-01 100.0% 68.6%
4995179 236.3.1.1 ↗ beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.54 37.0 3.50e-01 71.4% 76.5%
5022323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.05e-01 80.0% 100.0%
4101910 376.1.3.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.53 43.0 3.43e-01 91.4% 46.9%
3985617 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 43.0 4.35e-01 98.6% 91.4%
5013672 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 35.0 3.65e-01 71.4% 93.8%
3706741 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 38.0 2.74e-01 85.7% 35.9%
3993563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 2.60e-01 94.3% 18.3%
5031616 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.50 34.0 3.70e-01 72.9% 98.2%
3504365 633.23.1.38 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM127 0.50 36.0 2.61e-01 77.1% 29.8%