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MH509442.1__AXH46920.1__SEA_AMINAY_84__00084

Bact-Vir

MH509442.1__AXH46920.1__SEA_AMINAY_84__00084

Identity

Accession:
MH509442 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aminayvirus› Mycobacterium_phage_Aminay

TaxID: 2250291

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: rep: NC_051598.1__YP_009951172.1__I5G77_gp86__00086__D2-70
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.74 58.0 5.41e-01 100.0% 68.3%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 58.0 5.34e-01 100.0% 72.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 45.0 4.05e-01 75.8% 96.8%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 34.0 3.55e-01 89.4% 55.7%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 53.0 4.48e-01 100.0% 77.8%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 38.0 3.16e-01 100.0% 33.9%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 52.0 4.64e-01 100.0% 94.9%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.59 44.0 4.41e-01 98.5% 77.9%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.00e-01 100.0% 63.4%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.69e-01 100.0% 50.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 50.0 4.39e-01 100.0% 82.8%
3kt9A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 47.0 4.20e-01 100.0% 97.1%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 2.63e-01 77.3% 89.4%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 39.0 3.62e-01 75.8% 93.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.79e-01 90.9% 60.2%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.88e-01 100.0% 67.7%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 44.0 3.49e-01 90.9% 91.6%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.78e-01 100.0% 71.8%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.03e-01 89.4% 85.2%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 48.0 3.76e-01 100.0% 70.1%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 48.0 4.10e-01 100.0% 81.4%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.52e-01 74.2% 93.7%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 38.0 3.18e-01 100.0% 42.7%
2gf6A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.08e-01 100.0% 39.1%
2gi3A01 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.52 46.0 2.88e-01 100.0% 40.5%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 42.0 3.09e-01 92.4% 32.5%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.74e-01 100.0% 87.0%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.73e-01 100.0% 71.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 41.0 3.19e-01 92.4% 96.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.97e-01 98.5% 81.9%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.51 42.0 3.44e-01 100.0% 72.1%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.77e-01 90.9% 24.7%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.51 34.0 2.72e-01 71.2% 71.2%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.60e-01 100.0% 69.6%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.51 37.0 3.31e-01 78.8% 91.8%
4yj6A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.50 44.0 2.67e-01 100.0% 50.8%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 3.63e-01 98.5% 57.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2579422 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.73 58.0 5.13e-01 100.0% 59.6%
3480466 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.77e-01 100.0% 70.9%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 41.0 4.47e-01 100.0% 88.0%
3574392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 55.0 4.57e-01 100.0% 70.0%
4950851 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 40.0 4.74e-01 95.5% 97.8%
3510095 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 41.0 3.61e-01 100.0% 45.7%
3810742 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 3.97e-01 100.0% 52.3%
4105672 3986.1.1.1 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C 0.59 43.0 3.70e-01 97.0% 49.5%
4288346 3986.1.1.1 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain › LepA_C 0.59 44.0 3.76e-01 98.5% 50.5%
5032062 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 49.0 3.71e-01 100.0% 72.8%
3784671 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 3.82e-01 100.0% 75.0%
5065473 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 44.0 3.18e-01 86.4% 82.3%
3718188 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.57 49.0 4.14e-01 100.0% 78.3%
3586554 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.10e-01 100.0% 76.4%
3570691 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.56 48.0 4.14e-01 100.0% 67.3%
3854547 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.56 47.0 4.01e-01 100.0% 61.7%
5009577 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 43.0 3.64e-01 89.4% 70.4%
3178444 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.55 46.0 3.76e-01 100.0% 59.3%
3487225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.75e-01 100.0% 62.1%
3594093 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 45.0 3.29e-01 98.5% 40.0%
3390005 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 46.0 3.78e-01 100.0% 70.4%
3671194 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.05e-01 100.0% 74.3%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.55 48.0 4.68e-01 100.0% 94.7%
5008037 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.77e-01 95.5% 95.2%
3637624 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 39.0 3.25e-01 100.0% 42.5%
3791314 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 45.0 3.70e-01 100.0% 60.7%
3795297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.93e-01 100.0% 74.6%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.54 41.0 3.20e-01 87.9% 85.9%
3646010 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.20e-01 92.4% 54.7%
3493299 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 39.0 2.96e-01 90.9% 30.9%
3991351 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 46.0 3.64e-01 100.0% 55.9%
5015713 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 42.0 4.38e-01 100.0% 95.0%
4018289 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 41.0 3.26e-01 87.9% 95.2%
3502557 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.52 43.0 3.23e-01 100.0% 71.1%
4946790 223.1.1.122 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.50 45.0 3.35e-01 100.0% 55.2%