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MH509447.1__AXH47350.1__SEA_EDEN_55__00055

Bact-Vir

MH509447.1__AXH47350.1__SEA_EDEN_55__00055

Identity

Accession:
MH509447 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Edenvirus› Microbacterium_phage_Eden

TaxID: 2250289

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 5.82e-01 100.0% 71.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.74 66.0 6.38e-01 100.0% 88.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 5.94e-01 100.0% 79.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.90e-01 100.0% 96.2%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.51e-01 100.0% 81.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.42e-01 100.0% 79.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.61e-01 100.0% 80.6%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 5.13e-01 98.2% 73.8%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 4.62e-01 100.0% 47.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.30e-01 100.0% 76.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 56.0 5.47e-01 100.0% 88.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.97e-01 92.9% 90.8%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 52.0 3.74e-01 92.9% 81.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.15e-01 100.0% 86.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.35e-01 100.0% 95.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.77e-01 94.6% 80.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.64e-01 100.0% 70.1%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.32e-01 100.0% 76.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 3.62e-01 87.5% 45.7%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.76e-01 100.0% 98.5%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.57 49.0 3.57e-01 100.0% 35.8%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 43.0 3.59e-01 87.5% 71.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 46.0 3.41e-01 100.0% 86.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 46.0 3.41e-01 100.0% 44.5%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.41e-01 92.9% 48.3%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 44.0 3.50e-01 91.1% 65.0%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.55 45.0 4.08e-01 94.6% 83.3%
2gefA01 2.30.42.30 Mainly Beta › Roll › Pdz3 Domain › 0.54 43.0 3.63e-01 96.4% 85.7%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.23e-01 92.9% 72.4%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 44.0 2.79e-01 92.9% 33.6%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.53 41.0 2.91e-01 92.9% 94.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.40e-01 100.0% 51.5%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.07e-01 85.7% 78.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 42.0 3.53e-01 100.0% 74.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 45.0 3.00e-01 100.0% 83.7%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.28e-01 98.2% 97.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 37.0 2.51e-01 80.4% 31.0%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.35e-01 100.0% 91.2%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.09e-01 71.4% 67.4%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 38.0 2.57e-01 87.5% 71.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.45e-01 100.0% 54.7%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 66.0 6.52e-01 100.0% 90.0%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 64.0 6.03e-01 100.0% 79.4%
3821920 4.1.1.283 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.74 59.0 5.97e-01 100.0% 87.3%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 59.0 5.36e-01 100.0% 66.7%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 59.0 5.78e-01 100.0% 81.7%
4112177 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 58.0 5.55e-01 100.0% 75.4%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 58.0 5.43e-01 100.0% 70.0%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.72 64.0 5.37e-01 100.0% 66.3%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 61.0 4.93e-01 100.0% 58.2%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 62.0 5.68e-01 100.0% 81.3%
3637508 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.69 55.0 5.31e-01 100.0% 78.5%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.69 61.0 5.32e-01 100.0% 67.1%
4531569 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.68 57.0 5.55e-01 98.2% 85.0%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 56.0 4.24e-01 98.2% 38.0%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.89e-01 100.0% 93.3%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.68e-01 100.0% 87.7%
3276560 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.67 54.0 4.41e-01 87.5% 54.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 58.0 5.00e-01 100.0% 62.2%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.45e-01 98.2% 50.0%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 56.0 4.57e-01 100.0% 52.7%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 55.0 4.81e-01 100.0% 68.9%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.48e-01 100.0% 57.3%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 52.0 4.39e-01 100.0% 54.7%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.62e-01 100.0% 65.6%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 5.00e-01 100.0% 77.3%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.61 52.0 4.88e-01 100.0% 85.7%
3587259 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 52.0 4.52e-01 100.0% 63.3%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 48.0 4.16e-01 100.0% 60.0%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 3.78e-01 100.0% 61.3%
4998648 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.59 47.0 3.95e-01 87.5% 55.8%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 4.00e-01 96.4% 89.1%
5010832 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 48.0 4.26e-01 100.0% 83.1%
3836393 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.58 47.0 3.34e-01 94.6% 67.5%
3898198 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.58 46.0 3.71e-01 94.6% 64.0%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 48.0 4.20e-01 94.6% 70.6%
4329871 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 45.0 3.24e-01 94.6% 40.5%
3804236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.63e-01 100.0% 65.0%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.65e-01 100.0% 66.4%
3645975 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.56 48.0 3.28e-01 100.0% 54.4%
3880508 4.1.1.129 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.55 44.0 3.88e-01 100.0% 56.8%
4822902 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.55 42.0 3.24e-01 92.9% 48.1%
3300719 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 45.0 3.65e-01 98.2% 88.3%
3359953 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.54 47.0 3.33e-01 98.2% 66.3%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.54 46.0 4.19e-01 100.0% 100.0%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.14e-01 85.7% 89.1%
3291595 212.1.1.32 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › ChlI 0.54 42.0 3.71e-01 98.2% 97.0%
3462782 219.1.1.71 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.54 45.0 3.24e-01 96.4% 66.9%
4226250 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 40.0 2.80e-01 83.9% 55.0%
3939453 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.44e-01 96.4% 82.3%
3787702 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.53 44.0 3.32e-01 100.0% 93.5%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.52 40.0 4.09e-01 85.7% 89.1%
4949036 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.52 40.0 4.12e-01 85.7% 98.0%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.57e-01 100.0% 69.2%
3705742 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.51 38.0 3.85e-01 89.3% 84.5%
4014828 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 3.97e-01 87.5% 90.9%