←Back to structures
MH517022.1__AXF41397.1__SHAb15599_00028__00026
Bact-VirMH517022.1__AXF41397.1__SHAb15599_00028__00026
Identity
- Accession:
- MH517022 ↗
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Acinetobacter_phage_SH-Ab_15599
TaxID: 2202135
Cluster
View cluster (49 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-78_186-238
Domain cluster:
rep: HE815464.1__CCH63538.1__X__00076__D34-148
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.79 | 52.0 | 6.11e-01 | 93.3% | 94.1% |
| 6wqbA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 44.0 | 4.23e-01 | 93.3% | 78.6% |
| 2qe8A00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 44.0 | 3.30e-01 | 96.7% | 91.7% |
| 3efaA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 37.0 | 3.50e-01 | 75.0% | 70.5% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 41.0 | 3.80e-01 | 85.0% | 96.7% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.50 | 40.0 | 2.82e-01 | 87.5% | 81.2% |
| 4s1hA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 38.0 | 2.94e-01 | 80.0% | 90.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 358962 | 4401.1.1.1 ↗ | a+b complex topology › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Phage_sheath_domII | 0.82 | 78.0 | 6.85e-01 | 100.0% | 84.5% |
| 4957557 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.75 | 58.0 | 6.04e-01 | 93.3% | 86.4% |
| 5060660 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.66 | 58.0 | 5.83e-01 | 93.3% | 90.8% |
| 4029298 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 46.0 | 3.55e-01 | 85.0% | 53.8% |
| 4963226 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 48.0 | 4.13e-01 | 93.3% | 68.4% |
| 4261250 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.54 | 42.0 | 3.67e-01 | 84.2% | 66.3% |
| 3396227 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 34.0 | 3.58e-01 | 80.8% | 74.3% |
D2
high
residues 84-181
Domain cluster:
rep: MT499896.1__QMV34182.1__X__00104__D182-258
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cjsA00 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.71 | 40.0 | 4.95e-01 | 99.0% | 93.1% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 54.0 | 5.82e-01 | 100.0% | 92.9% |
| 2r7rA04 | 3.30.70.2480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 58.0 | 4.84e-01 | 100.0% | 54.8% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.69 | 37.0 | 3.91e-01 | 75.5% | 57.8% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 37.0 | 2.97e-01 | 78.6% | 26.5% |
| 1u5qA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 38.0 | 3.88e-01 | 76.5% | 57.3% |
| 3fxzA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.66 | 36.0 | 3.66e-01 | 76.5% | 53.1% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.63 | 47.0 | 5.00e-01 | 100.0% | 90.6% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.63 | 42.0 | 4.61e-01 | 86.7% | 83.5% |
| 2nwaA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.63 | 35.0 | 3.96e-01 | 82.7% | 72.0% |
| 4itjB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 36.0 | 3.79e-01 | 76.5% | 61.4% |
| 4c0tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 38.0 | 3.97e-01 | 82.7% | 65.2% |
| 1fnoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 56.0 | 5.40e-01 | 100.0% | 96.4% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.62 | 36.0 | 4.07e-01 | 87.8% | 76.0% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 37.0 | 3.84e-01 | 82.7% | 64.8% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 54.0 | 4.54e-01 | 100.0% | 59.5% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.60 | 50.0 | 4.82e-01 | 100.0% | 79.8% |
| 2vo8A00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 45.0 | 4.07e-01 | 100.0% | 58.5% |
| 4k59A00 | 2.60.40.4380 | Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA | 0.60 | 34.0 | 4.01e-01 | 99.0% | 83.3% |
| 2r4fA03 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.59 | 54.0 | 5.10e-01 | 100.0% | 87.2% |
| 5iqaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 33.0 | 3.48e-01 | 75.5% | 60.0% |
| 2fyxA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.58 | 52.0 | 4.78e-01 | 100.0% | 77.7% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.57 | 42.0 | 3.45e-01 | 79.6% | 47.9% |
| 1j5uA01 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.56 | 40.0 | 3.80e-01 | 74.5% | 99.1% |
| 2f5gA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.56 | 49.0 | 4.52e-01 | 100.0% | 74.6% |
| 3i9fB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 36.0 | 2.99e-01 | 81.6% | 37.9% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 4.12e-01 | 100.0% | 78.1% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.79e-01 | 92.9% | 68.6% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.55 | 49.0 | 4.80e-01 | 100.0% | 92.5% |
| 4exkA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.09e-01 | 96.9% | 75.0% |
| 1cwvA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 4.14e-01 | 99.0% | 78.4% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 3.95e-01 | 100.0% | 74.3% |
| 1nrkA03 | 2.40.30.160 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 38.0 | 3.54e-01 | 98.0% | 59.0% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.82e-01 | 98.0% | 84.6% |
| 4nehA04 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.52 | 44.0 | 3.76e-01 | 100.0% | 57.8% |
| 2w47A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 38.0 | 3.48e-01 | 100.0% | 56.3% |
| 1i9zA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.52 | 45.0 | 3.18e-01 | 100.0% | 83.9% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 3.02e-01 | 80.6% | 40.2% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.99e-01 | 86.7% | 84.8% |
| 3zxkA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.50e-01 | 99.0% | 70.4% |
| 2imqX00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.51 | 45.0 | 3.29e-01 | 100.0% | 97.5% |
| 4q9bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.65e-01 | 96.9% | 73.3% |
| 3n9vB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.50 | 43.0 | 3.22e-01 | 100.0% | 95.8% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166067 | 3019.1.1.7 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII | 0.74 | 68.0 | 6.71e-01 | 100.0% | 97.1% |
| 3726512 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.72 | 52.0 | 5.66e-01 | 95.9% | 91.3% |
| 3644664 | 256.1.1.7 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF7477 | 0.70 | 32.0 | 4.70e-01 | 78.6% | 97.7% |
| 3802438 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.68 | 38.0 | 2.83e-01 | 78.6% | 22.1% |
| 4929771 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.68 | 53.0 | 5.68e-01 | 99.0% | 97.6% |
| 5011632 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.66 | 49.0 | 4.59e-01 | 78.6% | 71.5% |
| 5039535 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.66 | 48.0 | 5.08e-01 | 92.9% | 87.1% |
| 5075567 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.64 | 57.0 | 5.52e-01 | 100.0% | 97.3% |
| 5007335 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 45.0 | 3.82e-01 | 100.0% | 45.5% |
| 3392791 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.61 | 48.0 | 3.34e-01 | 85.7% | 96.7% |
| 3338139 | 11.1.1.792 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ALE2_N | 0.60 | 54.0 | 5.15e-01 | 100.0% | 82.6% |
| 3870015 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.60 | 46.0 | 3.19e-01 | 81.6% | 94.0% |
| 3813777 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.60 | 54.0 | 5.26e-01 | 100.0% | 90.5% |
| 4947796 | 309.1.2.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_bind_4 | 0.59 | 54.0 | 4.42e-01 | 100.0% | 57.1% |
| 3968428 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.59 | 43.0 | 4.51e-01 | 90.8% | 83.3% |
| 4930719 | 309.1.2.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_bind_4 | 0.59 | 53.0 | 4.50e-01 | 100.0% | 59.4% |
| 3763545 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.59 | 53.0 | 5.07e-01 | 100.0% | 96.5% |
| 4854269 | 304.4.1.7 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket | 0.58 | 49.0 | 4.84e-01 | 100.0% | 88.5% |
| 3415491 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.58 | 43.0 | 3.08e-01 | 78.6% | 49.1% |
| 5021604 | 304.55.2.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp | 0.57 | 52.0 | 4.96e-01 | 100.0% | 88.7% |
| 5025438 | 304.4.1.8 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM | 0.56 | 49.0 | 4.91e-01 | 100.0% | 96.0% |
| 3474774 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.56 | 44.0 | 3.13e-01 | 85.7% | 100.0% |
| 3997847 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.56 | 50.0 | 4.98e-01 | 96.9% | 95.0% |
| 4956113 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 43.0 | 4.64e-01 | 98.0% | 98.8% |
| 4326223 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 43.0 | 4.01e-01 | 80.6% | 80.8% |
| 3874027 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.56 | 44.0 | 3.11e-01 | 85.7% | 100.0% |
| 4135983 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.55 | 41.0 | 4.11e-01 | 90.8% | 77.0% |
| 1855904 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.55 | 39.0 | 3.98e-01 | 96.9% | 74.0% |
| 3502555 | 328.3.1.0 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain | 0.55 | 42.0 | 4.26e-01 | 79.6% | 88.4% |
| 4347477 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.55 | 39.0 | 4.26e-01 | 96.9% | 91.3% |
| None | — | 0.55 | 42.0 | 3.12e-01 | 79.6% | 37.9% | |
| 2323865 | 1.1.7.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DNA_pol_B_3 | 0.55 | 37.0 | 3.97e-01 | 88.8% | 81.7% |
| 3543172 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.53e-01 | 98.0% | 51.7% |
| 4928207 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 36.0 | 4.09e-01 | 77.6% | 88.0% |
| 3948358 | 11.1.1.791 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8393 | 0.55 | 43.0 | 4.33e-01 | 100.0% | 82.0% |
| 3718926 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.55 | 48.0 | 3.36e-01 | 100.0% | 89.6% |
| 4024171 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.54 | 41.0 | 4.16e-01 | 79.6% | 91.6% |
| 3241616 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 41.0 | 2.93e-01 | 79.6% | 49.6% |
| 3232635 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.54 | 47.0 | 3.43e-01 | 100.0% | 96.2% |
| 4520138 | 328.3.1.2 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 | 0.53 | 39.0 | 3.73e-01 | 79.6% | 93.3% |
| 3599192 | 10.15.1.0 ↗ | beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like | 0.53 | 37.0 | 3.42e-01 | 100.0% | 56.8% |
| 3198188 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.52 | 45.0 | 3.14e-01 | 100.0% | 87.8% |
| 3823629 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.52 | 46.0 | 3.19e-01 | 100.0% | 86.8% |
| 3376744 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.73e-01 | 100.0% | 38.0% |
| 3485797 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 4.32e-01 | 100.0% | 87.0% |
| 3502782 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 39.0 | 3.79e-01 | 100.0% | 69.6% |
| 3592619 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 43.0 | 3.00e-01 | 90.8% | 44.2% |
| 4232128 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.52 | 34.0 | 3.70e-01 | 77.6% | 81.2% |
| 3888050 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.98e-01 | 99.0% | 77.3% |
| 3676013 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.52 | 45.0 | 3.16e-01 | 100.0% | 93.8% |
| 3713241 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.51 | 42.0 | 3.15e-01 | 93.9% | 86.0% |
| 3582722 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.51 | 36.0 | 2.39e-01 | 100.0% | 16.0% |
| 7885 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.51 | 45.0 | 3.29e-01 | 100.0% | 97.5% |
| 4942750 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 44.0 | 4.15e-01 | 100.0% | 96.0% |
D3
high
residues 250-431
Domain cluster:
rep: LC644975.1__BCZ76060.1__X__00055__D244-386
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04984.20 best | Phage_sheath_1 | 50.4 | 3.40e-13 | 93.4% | 94.6% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3foaB01 | 3.40.50.11780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.84 | 66.0 | 6.07e-01 | 89.0% | 65.9% |
| 2b7nA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 36.0 | 4.00e-01 | 89.6% | 66.4% |
| 2jbmA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 36.0 | 3.96e-01 | 89.6% | 67.8% |
| 2i5bA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 44.0 | 3.89e-01 | 73.6% | 72.5% |
| 3up8A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.61 | 44.0 | 3.78e-01 | 91.2% | 47.7% |
| 1rcqA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.60 | 38.0 | 3.70e-01 | 89.6% | 55.1% |
| 5ereA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 32.0 | 3.65e-01 | 90.7% | 66.4% |
| 3bg3A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 46.0 | 3.77e-01 | 92.9% | 46.1% |
| 3wg9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 29.0 | 3.31e-01 | 75.8% | 60.7% |
| 3b4uA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 47.0 | 4.03e-01 | 100.0% | 54.0% |
| 3nb0D01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 40.0 | 3.41e-01 | 70.3% | 85.4% |
| 3ntvA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 34.0 | 3.30e-01 | 72.5% | 51.4% |
| 1vb3A03 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 4.68e-01 | 100.0% | 97.3% |
| 2h6eA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 32.0 | 3.62e-01 | 72.0% | 72.7% |
| 3hpxA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 44.0 | 3.76e-01 | 92.3% | 54.0% |
| 2xhyD00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 48.0 | 3.59e-01 | 100.0% | 83.2% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.53 | 46.0 | 3.51e-01 | 93.4% | 51.8% |
| 3jyoA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 32.0 | 3.56e-01 | 72.0% | 76.2% |
| 2vxoA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 37.0 | 3.45e-01 | 71.4% | 73.8% |
| 1pbgA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 3.56e-01 | 100.0% | 84.1% |
| 3qokA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 44.0 | 3.76e-01 | 92.9% | 62.6% |
| 5jx5A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.51 | 44.0 | 3.63e-01 | 92.3% | 61.2% |
| 3dqpA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 4.19e-01 | 97.8% | 78.4% |
| 1h7nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 3.56e-01 | 92.9% | 49.7% |
| 4ywrA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 42.0 | 3.95e-01 | 100.0% | 71.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995822 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.93 | 88.0 | 7.60e-01 | 96.2% | 68.6% |
| 4888782 | 2499.2.1.2 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N | 0.92 | 90.0 | 7.55e-01 | 100.0% | 85.3% |
| 4882286 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.90 | 73.0 | 8.04e-01 | 89.6% | 100.0% |
| 5004680 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.86 | 80.0 | 6.74e-01 | 95.1% | 64.7% |
| 3978226 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.86 | 79.0 | 6.67e-01 | 95.1% | 68.2% |
| 3944167 | 2499.2.1.2 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N | 0.84 | 77.0 | 6.56e-01 | 94.5% | 65.2% |
| 1518917 | 2499.2.1.2 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N | 0.82 | 76.0 | 6.42e-01 | 95.1% | 64.8% |
| 1515363 | 2499.2.1.5 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › VipB | 0.80 | 72.0 | 6.00e-01 | 95.1% | 83.9% |
| 2468538 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.79 | 73.0 | 6.35e-01 | 96.2% | 76.7% |
| 5035737 | 2002.1.1.66 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I | 0.62 | 42.0 | 3.93e-01 | 92.9% | 53.9% |
| 5044693 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.56 | 34.0 | 3.53e-01 | 100.0% | 61.1% |
| 3789499 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.54 | 38.0 | 3.34e-01 | 71.4% | 64.6% |
| 3602977 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.53 | 34.0 | 3.50e-01 | 72.0% | 65.7% |
| None | — | 0.53 | 38.0 | 2.86e-01 | 73.6% | 71.9% | |
| 4927582 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.52 | 38.0 | 2.94e-01 | 74.2% | 70.6% |
| 4101393 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.52 | 37.0 | 3.35e-01 | 70.9% | 63.7% |
| 4614684 | 2002.2.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Cellulases › Cellulases › Glyco_hydro_6 | 0.52 | 45.0 | 3.53e-01 | 92.3% | 60.1% |
| 4020989 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 39.0 | 2.66e-01 | 92.3% | 22.0% |
| 8769 | 2002.1.1.24 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ALAD | 0.51 | 44.0 | 3.56e-01 | 92.9% | 49.7% |
| 3631383 | 2003.1.2.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase | 0.50 | 35.0 | 3.68e-01 | 90.7% | 78.8% |
| 3585189 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.50 | 36.0 | 3.74e-01 | 72.5% | 96.5% |
D4
medium
residues 446-535
Domain cluster:
rep: NC_049378.1__YP_009875985.1__HYP05_gp076__00076__D1-73
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17482.8 best | Phage_sheath_1C | 35.8 | 1.00e-08 | 87.8% | 71.2% |