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MH517022.1__AXF41451.1__SHAb15599_00089__00080

Bact-Vir

MH517022.1__AXF41451.1__SHAb15599_00089__00080

Identity

Accession:
MH517022 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.69 47.0 3.99e-01 70.8% 63.9%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.65 44.0 3.89e-01 70.8% 70.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.62 43.0 3.94e-01 73.6% 79.8%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 45.0 3.53e-01 80.6% 83.3%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 44.0 2.89e-01 80.6% 93.7%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 44.0 2.97e-01 84.7% 95.1%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 43.0 2.89e-01 84.7% 96.0%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.03e-01 97.2% 71.1%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.43e-01 70.8% 75.0%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.47e-01 88.9% 91.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.83e-01 94.4% 68.9%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.03e-01 97.2% 96.4%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.53 38.0 3.81e-01 77.8% 100.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 41.0 3.16e-01 94.4% 61.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 39.0 2.85e-01 88.9% 91.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260781 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.72 40.0 4.07e-01 80.6% 57.1%
3481690 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.70 38.0 3.60e-01 80.6% 45.2%
4030668 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.68 38.0 4.06e-01 81.9% 61.5%
3871299 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.67 57.0 4.12e-01 95.8% 92.4%
3716949 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 44.0 2.89e-01 80.6% 93.7%
3800929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 45.0 2.83e-01 81.9% 94.4%
3935730 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.59 40.0 3.74e-01 86.1% 55.6%
3358186 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 43.0 2.83e-01 80.6% 90.0%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.59 43.0 2.86e-01 80.6% 89.1%
3592731 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 44.0 2.83e-01 81.9% 88.5%
3936047 3153.1.1.0 a+b two layers › PipX › PipX › PipX 0.59 43.0 4.55e-01 81.9% 95.0%
3743825 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 43.0 2.88e-01 80.6% 90.0%
3490907 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 44.0 2.82e-01 81.9% 86.1%
3652683 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 44.0 2.85e-01 84.7% 92.5%
3711375 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 43.0 2.65e-01 81.9% 65.1%
3494259 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 44.0 2.81e-01 84.7% 96.2%
3426676 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 43.0 2.81e-01 81.9% 91.8%
4017540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 43.0 2.84e-01 81.9% 91.8%
3271037 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 42.0 2.68e-01 81.9% 95.6%
4003825 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 42.0 2.72e-01 81.9% 95.2%
3694580 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 43.0 2.75e-01 81.9% 93.0%
3386489 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 43.0 3.32e-01 81.9% 68.8%
3255440 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 42.0 2.77e-01 81.9% 88.6%
3484542 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 42.0 2.79e-01 81.9% 91.2%
3418449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 45.0 2.80e-01 88.9% 82.8%
3715657 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.56 40.0 3.57e-01 81.9% 53.5%
3940760 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 42.0 2.83e-01 81.9% 94.2%
3237895 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 42.0 2.79e-01 81.9% 93.0%
3783065 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 43.0 2.79e-01 84.7% 93.4%
3739929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 42.0 2.80e-01 81.9% 89.8%
3993647 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 41.0 2.75e-01 80.6% 91.7%
3692594 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 43.0 2.72e-01 84.7% 91.9%
3823449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 43.0 2.92e-01 86.1% 92.1%
3903582 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 42.0 2.75e-01 84.7% 96.6%
3636498 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 42.0 2.76e-01 84.7% 89.9%
3787662 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 40.0 2.60e-01 81.9% 90.0%
3178434 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 41.0 2.73e-01 84.7% 92.0%
3788099 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 41.0 2.62e-01 81.9% 93.4%
4389625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 37.0 4.09e-01 72.2% 98.2%
4263801 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 44.0 2.57e-01 95.8% 22.5%
4239498 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.52 35.0 3.82e-01 70.8% 90.9%
2649512 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.52 38.0 2.81e-01 77.8% 32.8%
3961571 3699.1.1.3 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.52 35.0 3.06e-01 70.8% 85.8%
4203469 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.50 34.0 3.75e-01 72.2% 96.4%
D2 high residues 77-133
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.76 55.0 4.17e-01 77.2% 34.6%
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.75 53.0 5.07e-01 78.9% 64.6%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 53.0 5.13e-01 77.2% 76.6%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 58.0 4.33e-01 86.0% 44.5%
1kf6A03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.70 50.0 3.92e-01 77.2% 35.8%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 4.89e-01 82.5% 69.3%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.70 49.0 3.86e-01 77.2% 36.2%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 62.0 5.39e-01 96.5% 73.5%
1qlbA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.67 48.0 3.84e-01 78.9% 37.3%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.67 46.0 4.27e-01 77.2% 55.3%
1zoyA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.63 45.0 3.64e-01 77.2% 37.6%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 44.0 4.11e-01 77.2% 56.0%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.63 56.0 4.57e-01 100.0% 58.1%
2ebfX02 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.63 49.0 3.78e-01 91.2% 79.0%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 53.0 3.73e-01 100.0% 72.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.60 45.0 4.01e-01 86.0% 78.0%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 53.0 3.85e-01 100.0% 60.7%
5li7A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 52.0 3.19e-01 100.0% 60.9%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.59 39.0 3.52e-01 78.9% 50.0%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.59 44.0 3.58e-01 80.7% 50.9%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 47.0 3.09e-01 94.7% 90.9%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.58 42.0 4.11e-01 84.2% 71.9%
3x0uB01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.58 47.0 3.26e-01 100.0% 57.2%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 41.0 3.71e-01 77.2% 84.1%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.56 42.0 3.46e-01 87.7% 61.3%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 48.0 3.94e-01 100.0% 100.0%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 3.59e-01 98.2% 43.8%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.53 42.0 2.80e-01 89.5% 39.2%
3f6tA02 1.10.20.110 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.53 39.0 3.04e-01 84.2% 58.5%
1jkwA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.18e-01 100.0% 31.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4259729 3755.3.1.295 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.89 60.0 4.40e-01 70.2% 34.8%
5037518 632.11.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.84 56.0 5.25e-01 77.2% 57.1%
3568826 5020.1.1.13 extended segments › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › TMEM219 0.80 59.0 5.61e-01 77.2% 75.4%
4030256 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.79 57.0 4.79e-01 77.2% 71.6%
4016595 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.76 52.0 4.66e-01 71.9% 51.2%
3959888 3922.1.1.159 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PPE 0.74 53.0 4.22e-01 78.9% 39.1%
3335074 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 63.0 4.77e-01 98.2% 79.2%
4034128 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.70 61.0 4.09e-01 98.2% 74.7%
3470962 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.69 60.0 5.23e-01 96.5% 72.9%
5014267 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.68 46.0 4.32e-01 70.2% 55.7%
3971109 5086.1.1.85 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AAEA_pHBA 0.68 47.0 4.34e-01 77.2% 56.0%
3626530 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 55.0 4.62e-01 89.5% 76.8%
3834034 5067.1.1.13 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT 0.65 55.0 4.01e-01 96.5% 87.9%
3785092 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 51.0 3.76e-01 89.5% 60.0%
3805429 3562.1.1.33 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › ALMT 0.64 55.0 4.05e-01 98.2% 89.4%
4950112 604.5.1.1 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div 0.63 55.0 3.81e-01 100.0% 70.1%
3193224 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.61 51.0 3.37e-01 100.0% 21.1%
5016149 5045.1.1.3 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.61 51.0 3.23e-01 100.0% 17.9%
3248874 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.60 50.0 3.78e-01 100.0% 88.4%
5044070 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 41.0 3.63e-01 77.2% 48.9%
4675560 1149.1.1.1 alpha bundles › CRISPR-Cas system second helical domain › CRISPR-Cas system second helical domain › CRISPR-Cas system RNase C2c2 second helical domain › Cas13a_endoribonuclease 0.56 47.0 3.16e-01 100.0% 49.6%
3663646 7064.1.1.5 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › ALMT 0.56 46.0 3.70e-01 98.2% 78.4%
4597485 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.53 42.0 2.56e-01 89.5% 34.3%