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MH533020.1__AXN57842.1__X__00111

Bact-Vir

MH533020.1__AXN57842.1__X__00111

Identity

Accession:
MH533020 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mheA00 3.30.70.2400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 0.83 73.0 6.58e-01 100.0% 82.4%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.76 57.0 4.31e-01 81.1% 79.5%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 53.0 4.40e-01 100.0% 45.4%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.71 59.0 5.04e-01 94.3% 100.0%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 5.30e-01 100.0% 92.7%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 52.0 4.69e-01 100.0% 58.2%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 57.0 4.90e-01 100.0% 93.3%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 53.0 4.62e-01 100.0% 55.7%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.66 54.0 3.60e-01 100.0% 38.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 54.0 3.95e-01 100.0% 47.9%
8gk4C02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.65 53.0 4.47e-01 94.3% 100.0%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 4.75e-01 100.0% 91.0%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.38e-01 100.0% 50.0%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.44e-01 100.0% 61.6%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.64 53.0 4.51e-01 98.1% 93.8%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 44.0 3.13e-01 73.6% 79.3%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 53.0 4.29e-01 100.0% 60.4%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.62 50.0 4.07e-01 100.0% 45.5%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 53.0 4.00e-01 100.0% 50.0%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 46.0 3.56e-01 79.2% 40.5%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 3.56e-01 100.0% 31.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 50.0 4.33e-01 98.1% 57.6%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.62 50.0 3.66e-01 100.0% 35.5%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.34e-01 100.0% 58.9%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 51.0 4.52e-01 100.0% 97.6%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.61 51.0 4.00e-01 100.0% 45.2%
1x4zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.26e-01 100.0% 54.0%
6pogA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.15e-01 100.0% 51.5%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 3.98e-01 100.0% 62.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 47.0 3.87e-01 100.0% 54.5%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.05e-01 100.0% 49.6%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 44.0 3.43e-01 83.0% 77.2%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.59 48.0 4.65e-01 98.1% 85.7%
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.83e-01 98.1% 54.8%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 3.90e-01 100.0% 52.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 46.0 3.92e-01 100.0% 58.7%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 47.0 3.88e-01 100.0% 46.8%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.00e-01 100.0% 55.7%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 3.89e-01 100.0% 64.0%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.61e-01 100.0% 49.0%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.57 43.0 3.30e-01 98.1% 31.8%
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.31e-01 86.8% 86.4%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 46.0 3.98e-01 100.0% 62.5%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.56 39.0 3.33e-01 77.4% 65.3%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 45.0 3.56e-01 100.0% 41.7%
3unpA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.25e-01 100.0% 27.5%
4y0eB00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.53 41.0 2.57e-01 84.9% 59.6%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 3.34e-01 100.0% 38.2%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.57e-01 100.0% 47.3%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.38e-01 96.2% 63.0%
3delB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 43.0 3.71e-01 98.1% 95.7%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.52 39.0 3.45e-01 94.3% 67.7%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 40.0 3.10e-01 100.0% 53.4%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 42.0 3.85e-01 100.0% 91.1%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 40.0 2.93e-01 100.0% 89.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3313016 3397.1.1.2 a+b complex topology › Tic22 › Tic22 › Tic22 › DUF3110 0.89 82.0 6.13e-01 100.0% 59.2%
3734833 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.83 75.0 6.17e-01 98.1% 98.9%
1146593 304.14.1.2 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › DUF4170 0.83 73.0 6.58e-01 100.0% 82.4%
3408253 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.70 53.0 4.21e-01 100.0% 39.1%
4996595 5103.1.1.0 a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.70 56.0 4.52e-01 92.5% 60.0%
5053097 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 56.0 4.74e-01 96.2% 93.7%
3866856 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 51.0 3.27e-01 100.0% 15.9%
5032056 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 57.0 4.69e-01 100.0% 85.4%
3412356 821.1.1.8 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.67 51.0 3.97e-01 83.0% 84.3%
3516431 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.66 50.0 4.22e-01 100.0% 47.4%
3261440 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 54.0 5.14e-01 100.0% 75.4%
3893718 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.66 58.0 4.14e-01 100.0% 37.4%
3502827 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.65 54.0 4.47e-01 100.0% 51.0%
4438218 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 53.0 4.37e-01 98.1% 90.0%
3897051 821.1.1.8 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.65 51.0 4.04e-01 84.9% 83.8%
3194942 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 53.0 3.98e-01 100.0% 36.4%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.65 55.0 4.54e-01 98.1% 79.0%
4961378 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 54.0 4.67e-01 100.0% 93.3%
3914412 10.2.1.31 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.64 50.0 4.02e-01 100.0% 42.7%
3608234 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 51.0 4.01e-01 100.0% 45.2%
3507892 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 52.0 4.47e-01 100.0% 56.7%
3264007 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.26e-01 100.0% 51.6%
3222685 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 54.0 4.39e-01 100.0% 51.4%
4968436 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 3.49e-01 100.0% 27.6%
3472541 10.32.1.184 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II 0.62 47.0 3.96e-01 98.1% 46.9%
3941935 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 52.0 4.19e-01 100.0% 56.5%
3275143 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.61 44.0 3.17e-01 79.2% 25.3%
3265307 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 50.0 4.10e-01 98.1% 67.3%
3577272 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 51.0 4.25e-01 100.0% 53.0%
3840130 272.1.1.3 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.60 44.0 3.85e-01 81.1% 96.5%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 45.0 4.57e-01 100.0% 96.0%
3509945 11.1.1.60 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.59 49.0 4.27e-01 100.0% 76.7%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.59 48.0 4.65e-01 98.1% 85.7%
3348136 304.110.1.4 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.59 51.0 4.02e-01 100.0% 67.0%
4863191 3662.1.1.3 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.59 44.0 3.59e-01 84.9% 46.0%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 47.0 3.85e-01 100.0% 51.3%
4418109 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 46.0 3.62e-01 100.0% 42.0%
4943853 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.13e-01 79.2% 89.0%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.18e-01 79.2% 32.6%
4364088 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.57 42.0 4.44e-01 90.6% 100.0%
5049518 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.34e-01 84.9% 82.9%
4031279 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 44.0 3.51e-01 100.0% 42.1%
3682205 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.13e-01 83.0% 76.6%
3252771 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 45.0 4.05e-01 100.0% 65.9%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.56 41.0 4.35e-01 98.1% 100.0%
3501768 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 45.0 4.22e-01 100.0% 80.0%
4983090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 43.0 3.97e-01 98.1% 65.8%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 44.0 4.10e-01 100.0% 72.9%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.52 43.0 3.57e-01 100.0% 49.1%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.52 42.0 3.65e-01 100.0% 56.7%
3811380 10.12.1.10 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC,JmjN 0.52 44.0 2.80e-01 100.0% 26.7%
5052820 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.08e-01 100.0% 48.4%
3407700 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 40.0 3.10e-01 100.0% 56.2%
5049343 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.51 43.0 3.25e-01 100.0% 44.6%