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MH536815.1__AXH49446.1__SEA_CROSBY_58__00058

Bact-Vir

MH536815.1__AXH49446.1__SEA_CROSBY_58__00058

Identity

Accession:
MH536815 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-119
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aqpA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 42.0 3.43e-01 71.6% 33.8%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 40.0 3.76e-01 81.8% 48.1%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 40.0 4.29e-01 71.6% 70.3%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 45.0 4.59e-01 75.0% 71.8%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 33.0 3.88e-01 70.5% 69.5%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 52.0 5.27e-01 98.9% 87.4%
2di8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 43.0 4.20e-01 84.1% 61.7%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 47.0 5.10e-01 89.8% 93.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 3.85e-01 77.3% 58.8%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 41.0 4.08e-01 84.1% 63.3%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 40.0 3.79e-01 71.6% 52.8%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 3.97e-01 70.5% 60.0%
6vfqA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.61 44.0 4.04e-01 86.4% 57.9%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 37.0 3.73e-01 72.7% 59.1%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 3.85e-01 70.5% 60.2%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 37.0 3.64e-01 72.7% 55.9%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 3.50e-01 70.5% 48.3%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 3.64e-01 72.7% 54.4%
2pofA00 3.30.428.30 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT family - CDH-like 0.60 48.0 3.61e-01 90.9% 35.0%
3rghA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.87e-01 84.1% 62.5%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 37.0 3.72e-01 71.6% 60.2%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 3.65e-01 70.5% 54.7%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 3.67e-01 70.5% 66.2%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 41.0 4.27e-01 86.4% 80.5%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.58 40.0 2.83e-01 70.5% 75.7%
2pd1A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.64e-01 70.5% 58.9%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 32.0 3.62e-01 70.5% 70.1%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 41.0 4.30e-01 87.5% 88.0%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 3.39e-01 85.2% 35.7%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.62e-01 75.0% 60.9%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.28e-01 71.6% 77.3%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.28e-01 86.4% 85.7%
2b3tA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 43.0 3.42e-01 85.2% 47.4%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.56 44.0 4.57e-01 86.4% 95.0%
1vq8S00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 4.04e-01 85.2% 80.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.67e-01 84.1% 57.5%
1pbyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.62e-01 86.4% 71.1%
2pjdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 3.30e-01 85.2% 42.9%
3hozA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 44.0 4.16e-01 86.4% 86.4%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 36.0 3.69e-01 70.5% 70.6%
6hhnA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.56e-01 70.5% 64.1%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.65e-01 72.7% 95.0%
7cqnC01 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.54 48.0 3.29e-01 100.0% 80.2%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 44.0 3.83e-01 89.8% 72.8%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.79e-01 70.5% 78.0%
3ocjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 2.93e-01 85.2% 37.0%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 40.0 3.49e-01 83.0% 87.0%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 41.0 3.59e-01 85.2% 84.7%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 41.0 3.39e-01 84.1% 72.4%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 4.01e-01 76.1% 98.7%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 42.0 3.02e-01 86.4% 90.4%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.50e-01 87.5% 80.4%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 41.0 3.03e-01 84.1% 34.8%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.57e-01 73.9% 99.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 43.0 3.99e-01 92.0% 82.5%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.44e-01 72.7% 79.6%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.50 39.0 3.33e-01 84.1% 78.6%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.37e-01 80.7% 58.9%
3s6sB00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.50 39.0 3.23e-01 87.5% 56.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.59e-01 79.5% 69.9%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4265078 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.74 44.0 4.69e-01 70.5% 69.3%
3956780 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.68 46.0 4.82e-01 70.5% 76.2%
4071657 304.38.1.1 a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI 0.68 44.0 4.29e-01 70.5% 60.0%
5039535 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 42.0 4.27e-01 71.6% 63.5%
4971598 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 40.0 4.27e-01 70.5% 69.3%
2834102 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 42.0 4.27e-01 71.6% 66.3%
4193755 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.65 38.0 4.05e-01 75.0% 66.7%
4316518 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.64 40.0 4.03e-01 70.5% 62.2%
5013852 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.64 40.0 4.08e-01 70.5% 64.7%
4975956 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.63 38.0 3.87e-01 71.6% 61.2%
4024179 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.62 44.0 3.34e-01 83.0% 31.0%
5029644 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.62 41.0 3.91e-01 71.6% 57.1%
5074162 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.62 38.0 3.73e-01 72.7% 55.8%
3286580 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.61 41.0 4.00e-01 72.7% 61.0%
4240079 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.61 39.0 3.81e-01 70.5% 57.0%
4947398 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 35.0 3.74e-01 73.9% 64.0%
4998201 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 38.0 3.84e-01 70.5% 63.5%
3285016 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.60 36.0 3.62e-01 72.7% 56.7%
4983119 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.60 37.0 3.69e-01 70.5% 59.6%
3415133 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.60 38.0 3.75e-01 71.6% 58.9%
5036264 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.60 40.0 3.80e-01 71.6% 57.1%
3948220 312.1.1.4 a+b three layers › HIT-like › HIT-related › HIT-related › CDH 0.60 48.0 4.49e-01 92.0% 70.0%
5041003 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.60 34.0 3.62e-01 73.9% 61.5%
5072410 306.6.1.6 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › GH3_C 0.59 41.0 4.11e-01 84.1% 70.0%
4515869 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.59 38.0 3.81e-01 70.5% 62.9%
5054678 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.59 35.0 3.76e-01 71.6% 68.0%
3967987 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 40.0 3.76e-01 72.7% 93.6%
4946524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.69e-01 80.7% 58.2%
5177 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 40.0 3.92e-01 76.1% 98.0%
3634393 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 41.0 4.02e-01 78.4% 96.0%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 42.0 4.18e-01 84.1% 75.6%
3209679 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 36.0 3.61e-01 70.5% 61.1%
4971747 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 43.0 3.96e-01 84.1% 64.5%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.81e-01 86.4% 58.3%
1146763 101.1.2.72 alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN 0.56 40.0 4.28e-01 86.4% 85.7%
5079724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.84e-01 83.0% 63.8%
5006003 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 41.0 3.70e-01 84.1% 56.7%
5039525 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 35.0 3.55e-01 70.5% 62.2%
5082809 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 41.0 3.87e-01 84.1% 65.7%
4038066 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 41.0 3.78e-01 80.7% 88.6%
5019432 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 41.0 3.56e-01 83.0% 53.1%
4965036 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 42.0 3.84e-01 88.6% 62.6%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.54 40.0 3.60e-01 84.1% 56.1%
4089543 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.54 37.0 2.87e-01 70.5% 40.0%
4965203 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 41.0 3.80e-01 84.1% 64.8%
3602715 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 41.0 3.60e-01 84.1% 56.0%
4228655 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.54 41.0 3.03e-01 84.1% 54.1%
4957079 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 39.0 3.89e-01 83.0% 74.4%
3738021 304.8.1.105 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF30953 0.53 39.0 3.64e-01 80.7% 91.7%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.56e-01 84.1% 60.9%
5016351 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.53 40.0 3.63e-01 84.1% 60.9%
4078130 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.53 40.0 2.95e-01 84.1% 53.1%
5059461 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 39.0 3.51e-01 85.2% 56.0%
5035027 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 39.0 3.54e-01 83.0% 58.0%
5023661 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 40.0 3.51e-01 87.5% 56.6%
4954852 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.51 40.0 3.20e-01 83.0% 48.6%
11228 2484.1.1.47 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.51 37.0 3.25e-01 80.7% 47.9%
3800979 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 32.0 3.26e-01 70.5% 62.2%
4982081 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 39.0 3.57e-01 87.5% 62.6%
4054258 2484.1.1.47 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.50 38.0 3.34e-01 83.0% 51.4%