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MH536815.1__AXH49463.1__SEA_CROSBY_75__00075

Bact-Vir

MH536815.1__AXH49463.1__SEA_CROSBY_75__00075

Identity

Accession:
MH536815 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_Crosby

TaxID: 2250337

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF24463.2 best DUF7577 36.3 4.60e-09 50.9% 92.6%
PF13240.12 Zn_Ribbon_1 34.1 2.20e-08 43.4% 100.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 41.0 2.43e-01 75.5% 51.4%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 47.0 2.97e-01 98.1% 84.1%
3laaA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.54 39.0 2.91e-01 84.9% 36.7%
1biqA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.53 42.0 2.70e-01 100.0% 40.3%
8a6tB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.23e-01 98.1% 74.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3610910 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 5.80e-01 81.1% 100.0%
4309086 5056.1.1.1 ↗ extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › MscL 0.75 47.0 3.27e-01 73.6% 20.6%
3885765 375.2.1.3 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › DZR 0.72 56.0 5.59e-01 83.0% 92.7%
3224075 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.70 53.0 3.39e-01 81.1% 53.1%
None — 0.69 49.0 3.81e-01 79.2% 33.3%
3601630 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 48.0 3.01e-01 75.5% 40.7%
3595166 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 51.0 3.72e-01 81.1% 37.2%
3609075 375.1.1.4 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.66 48.0 3.97e-01 81.1% 42.0%
4490930 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.63 46.0 4.49e-01 94.3% 73.3%
3716600 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 2.94e-01 100.0% 11.7%
3731328 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 35.0 1.98e-01 77.4% 4.3%
4313184 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.55 40.0 3.93e-01 98.1% 73.3%
4575985 5056.1.1.1 ↗ extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › MscL 0.54 45.0 3.46e-01 96.2% 40.6%
3718299 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 2.61e-01 94.3% 37.7%
3735848 109.4.1.1553 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.53 47.0 2.59e-01 100.0% 12.4%
3949778 2007.1.6.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Bac_GDH_CD 0.52 37.0 2.52e-01 75.5% 25.6%
3479139 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 45.0 2.79e-01 100.0% 28.1%