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MH536818.1__AXH49685.1__SEA_FROKOSTDAME_43__00043
Bact-VirMH536818.1__AXH49685.1__SEA_FROKOSTDAME_43__00043
Identity
- Accession:
- MH536818 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Taxonomy
TaxID: 2250320
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-116
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.75 | 36.0 | 3.93e-01 | 80.2% | 54.7% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 33.0 | 3.21e-01 | 73.0% | 42.7% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.65 | 43.0 | 3.76e-01 | 100.0% | 43.5% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.62 | 43.0 | 3.18e-01 | 72.1% | 46.8% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 44.0 | 4.13e-01 | 74.8% | 65.5% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 43.0 | 3.69e-01 | 100.0% | 47.9% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 37.0 | 4.42e-01 | 90.1% | 90.7% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.61 | 40.0 | 3.90e-01 | 94.6% | 60.0% |
| 3d3lA02 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 32.0 | 3.79e-01 | 81.1% | 73.8% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.59 | 42.0 | 4.30e-01 | 99.1% | 76.6% |
| 3zxfA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 52.0 | 4.89e-01 | 100.0% | 85.2% |
| 1t3qC03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.57 | 43.0 | 4.30e-01 | 97.3% | 78.4% |
| 1ewfA02 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.56 | 47.0 | 3.48e-01 | 89.2% | 51.4% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 44.0 | 4.34e-01 | 91.9% | 79.0% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.55 | 34.0 | 3.98e-01 | 77.5% | 88.3% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.54 | 49.0 | 4.16e-01 | 97.3% | 61.5% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.53 | 48.0 | 4.32e-01 | 100.0% | 74.2% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 4.04e-01 | 96.4% | 95.7% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 38.0 | 3.41e-01 | 74.8% | 93.5% |
| 2m47A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 36.0 | 3.20e-01 | 70.3% | 50.9% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 39.0 | 3.60e-01 | 77.5% | 97.9% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.78e-01 | 95.5% | 82.6% |
| 2fa1A00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.52 | 38.0 | 3.41e-01 | 74.8% | 84.9% |
| 3ddvB01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.52 | 37.0 | 3.50e-01 | 73.9% | 97.1% |
| 2qwzA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 38.0 | 3.60e-01 | 98.2% | 64.7% |
| 2joeA01 | 3.30.1830.10 | Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like | 0.51 | 43.0 | 4.13e-01 | 91.9% | 96.1% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 36.0 | 3.28e-01 | 71.2% | 56.1% |
| 3cnvA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.51 | 36.0 | 3.30e-01 | 73.9% | 87.7% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.75e-01 | 85.6% | 99.3% |
| 2nwiB00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.50 | 37.0 | 3.33e-01 | 74.8% | 82.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3431175 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.70 | 43.0 | 4.57e-01 | 94.6% | 69.0% |
| 4946845 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.67 | 36.0 | 2.77e-01 | 80.2% | 23.3% |
| 3616128 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.66 | 57.0 | 4.26e-01 | 93.7% | 84.3% |
| 3235810 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.66 | 57.0 | 4.27e-01 | 93.7% | 82.6% |
| 3814437 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 39.0 | 3.42e-01 | 73.0% | 41.8% |
| 3398781 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.63 | 58.0 | 4.23e-01 | 100.0% | 65.3% |
| 1933307 | 9.13.1.5 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like | 0.63 | 43.0 | 4.17e-01 | 70.3% | 73.2% |
| 3973908 | 881.1.1.25 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 | 0.62 | 41.0 | 3.69e-01 | 100.0% | 47.1% |
| 5062234 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.62 | 34.0 | 3.31e-01 | 73.0% | 47.5% |
| 5009443 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.61 | 43.0 | 4.48e-01 | 97.3% | 77.1% |
| 146266 | 295.1.1.8 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 | 0.61 | 37.0 | 4.21e-01 | 91.0% | 81.0% |
| 3554889 | 5.1.3.251 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF28327 | 0.60 | 45.0 | 3.08e-01 | 99.1% | 23.9% |
| 3857562 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 41.0 | 3.27e-01 | 100.0% | 37.2% |
| 3596114 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.59 | 42.0 | 3.49e-01 | 100.0% | 44.1% |
| 4100381 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.58 | 47.0 | 3.06e-01 | 86.5% | 20.4% |
| 3227789 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 45.0 | 3.12e-01 | 91.9% | 26.2% |
| 3351533 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.57 | 44.0 | 3.15e-01 | 81.1% | 31.7% |
| 4983770 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.56 | 42.0 | 4.28e-01 | 100.0% | 79.1% |
| 3507165 | 719.1.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 | 0.56 | 43.0 | 4.18e-01 | 98.2% | 72.8% |
| 4962629 | 71.1.1.27 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF7537 | 0.56 | 49.0 | 3.93e-01 | 92.8% | 60.8% |
| 3773523 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.56 | 36.0 | 3.19e-01 | 73.9% | 45.8% |
| 3817727 | 295.1.1.44 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29049 | 0.56 | 39.0 | 4.16e-01 | 88.3% | 84.2% |
| 3959063 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 48.0 | 4.36e-01 | 99.1% | 91.3% |
| 5014023 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.53 | 45.0 | 3.85e-01 | 92.8% | 80.4% |
| 3413325 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 3.00e-01 | 89.2% | 71.8% |
| 5047489 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.52 | 46.0 | 3.79e-01 | 98.2% | 79.5% |
| 3740272 | 5.1.4.32 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N | 0.52 | 45.0 | 3.08e-01 | 97.3% | 47.1% |
| 3284169 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.52 | 39.0 | 3.61e-01 | 79.3% | 74.3% |
| 3615185 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 41.0 | 2.74e-01 | 98.2% | 23.6% |
| 3727006 | 243.1.1.9 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 | 0.50 | 40.0 | 3.62e-01 | 89.2% | 97.6% |