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MH536824.1__AXH50370.1__SEA_NATB6_90__00090

Bact-Vir

MH536824.1__AXH50370.1__SEA_NATB6_90__00090

Identity

Accession:
MH536824 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Foxborovirus› Gordonia_phage_NatB6

TaxID: 2250322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-59
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.79 58.0 4.93e-01 91.8% 48.8%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 5.55e-01 100.0% 55.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 6.54e-01 100.0% 100.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 4.79e-01 100.0% 39.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 67.0 6.02e-01 100.0% 89.4%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 5.92e-01 100.0% 80.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 5.83e-01 100.0% 91.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.73 63.0 5.57e-01 100.0% 89.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 5.92e-01 100.0% 92.2%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.73 62.0 5.21e-01 100.0% 85.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.89e-01 100.0% 84.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.56e-01 100.0% 82.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.62e-01 100.0% 83.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.44e-01 98.0% 79.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 56.0 5.50e-01 100.0% 87.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.01e-01 100.0% 76.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 55.0 5.21e-01 100.0% 88.7%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 54.0 4.32e-01 100.0% 47.7%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 51.0 3.56e-01 100.0% 29.3%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 51.0 3.85e-01 100.0% 38.0%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 51.0 4.17e-01 100.0% 63.5%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.38e-01 100.0% 57.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 4.90e-01 100.0% 86.4%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.56e-01 100.0% 43.5%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.06e-01 100.0% 78.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 4.36e-01 81.6% 79.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.29e-01 100.0% 75.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 48.0 4.33e-01 95.9% 87.3%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 2.89e-01 100.0% 39.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.09e-01 100.0% 55.8%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 3.45e-01 100.0% 36.4%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.05e-01 85.7% 81.2%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 4.38e-01 91.8% 78.6%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.73e-01 85.7% 71.8%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 42.0 2.72e-01 87.8% 43.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 40.0 3.27e-01 81.6% 77.9%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 40.0 3.55e-01 87.8% 90.2%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.54 43.0 3.24e-01 100.0% 77.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 40.0 3.11e-01 87.8% 76.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.30e-01 87.8% 61.7%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 41.0 2.72e-01 98.0% 43.5%
1tzdA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.52 35.0 2.42e-01 77.6% 43.6%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 34.0 2.64e-01 71.4% 28.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.50 38.0 3.82e-01 87.8% 91.7%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 39.0 3.10e-01 100.0% 38.8%
4xhzA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 39.0 3.17e-01 87.8% 78.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 74.0 6.55e-01 100.0% 90.0%
5052257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 67.0 6.25e-01 100.0% 75.0%
3484700 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.80 70.0 5.56e-01 100.0% 57.0%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 5.76e-01 100.0% 58.7%
4185615 4.1.1.331 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4708 0.77 67.0 5.04e-01 100.0% 64.2%
3698280 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 67.0 5.27e-01 98.0% 56.0%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.76 67.0 4.84e-01 100.0% 36.3%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.31e-01 100.0% 61.1%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.98e-01 100.0% 90.8%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 64.0 5.87e-01 100.0% 81.5%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.74 64.0 4.59e-01 100.0% 34.5%
5043697 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.91e-01 100.0% 75.4%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 64.0 5.82e-01 98.0% 93.8%
3480200 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 64.0 5.57e-01 100.0% 96.0%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 65.0 5.27e-01 100.0% 65.6%
3987601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 6.16e-01 95.9% 98.0%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 64.0 5.48e-01 100.0% 73.8%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.69e-01 100.0% 76.9%
4519674 4.1.1.186 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5397 0.71 59.0 5.70e-01 100.0% 87.9%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.71 58.0 4.53e-01 100.0% 55.8%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.70 61.0 5.60e-01 100.0% 80.0%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 60.0 4.45e-01 100.0% 38.5%
3702202 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 59.0 3.61e-01 100.0% 26.6%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 57.0 5.44e-01 100.0% 95.0%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.26e-01 100.0% 90.8%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.15e-01 100.0% 81.0%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.10e-01 100.0% 81.7%
4016930 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.65 53.0 3.81e-01 100.0% 33.9%
3713683 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.64 51.0 4.08e-01 98.0% 47.8%
4053455 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 45.0 4.10e-01 85.7% 55.7%
5068388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.62 47.0 4.63e-01 87.8% 89.1%
4149372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 4.16e-01 85.7% 60.0%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.13e-01 100.0% 54.1%
4973274 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.60 49.0 4.76e-01 91.8% 83.6%
4940372 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.60 46.0 4.17e-01 85.7% 60.0%
3396910 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 49.0 3.48e-01 100.0% 98.3%
4315771 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.59 48.0 4.39e-01 91.8% 84.6%
4945674 2.1.1.252 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C 0.58 48.0 4.28e-01 91.8% 78.6%
3983195 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 43.0 4.44e-01 87.8% 91.1%
3726095 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 44.0 2.68e-01 95.9% 24.1%
3355599 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.57 38.0 2.98e-01 71.4% 66.7%
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.57 45.0 3.36e-01 98.0% 76.8%
3919588 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.55 44.0 3.42e-01 100.0% 85.2%
3479794 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.55 42.0 2.65e-01 89.8% 13.8%
3192301 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 2.75e-01 95.9% 63.8%
5002178 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.53 36.0 3.65e-01 77.6% 74.0%
3197575 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.51 39.0 3.35e-01 89.8% 81.1%