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MH540083.1__AXF42111.1__STIP37_53__00054
Bact-VirMH540083.1__AXF42111.1__STIP37_53__00054
Identity
- Accession:
- MH540083 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Igirivirus›
Synechococcus_T7-like_phage_S-TIP37
TaxID: 1332145
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.70 | 46.0 | 3.95e-01 | 83.1% | 41.8% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.66 | 59.0 | 5.26e-01 | 98.3% | 84.3% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 42.0 | 3.76e-01 | 83.1% | 47.1% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 43.0 | 3.57e-01 | 83.1% | 40.9% |
| 2b4vA02 | 3.30.460.50 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.58 | 45.0 | 3.70e-01 | 91.5% | 43.7% |
| 1fi4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 52.0 | 3.54e-01 | 98.3% | 53.0% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 48.0 | 3.55e-01 | 100.0% | 58.1% |
| 7w8fA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 43.0 | 3.34e-01 | 81.4% | 99.3% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 43.0 | 3.62e-01 | 88.1% | 97.4% |
| 3hlbD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 49.0 | 3.00e-01 | 100.0% | 66.2% |
| 5cs2A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.55 | 41.0 | 3.17e-01 | 83.1% | 33.3% |
| 4oteB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 3.38e-01 | 89.8% | 38.2% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 3.71e-01 | 78.0% | 94.4% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.54 | 45.0 | 3.84e-01 | 100.0% | 95.4% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.24e-01 | 81.4% | 42.4% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.53 | 44.0 | 3.49e-01 | 91.5% | 62.5% |
| 4cp8E00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.52 | 43.0 | 2.59e-01 | 93.2% | 45.1% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.52 | 37.0 | 2.96e-01 | 79.7% | 52.6% |
| 1yrvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 40.0 | 2.96e-01 | 84.7% | 35.3% |
| 3sb1A01 | 3.30.1370.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain | 0.51 | 40.0 | 3.49e-01 | 91.5% | 61.6% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 35.0 | 3.27e-01 | 76.3% | 74.1% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 43.0 | 3.22e-01 | 96.6% | 78.9% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4839749 | 3821.1.1.0 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain | 0.83 | 54.0 | 6.09e-01 | 81.4% | 88.9% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.73 | 63.0 | 5.06e-01 | 93.2% | 62.4% |
| 3440476 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.73 | 67.0 | 5.25e-01 | 100.0% | 67.2% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 68.0 | 5.20e-01 | 100.0% | 68.0% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.73 | 56.0 | 3.82e-01 | 83.1% | 25.9% |
| 2663386 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.72 | 64.0 | 4.50e-01 | 96.6% | 58.6% |
| 3317146 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 65.0 | 5.06e-01 | 100.0% | 64.5% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.71 | 55.0 | 3.73e-01 | 83.1% | 25.4% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.70 | 61.0 | 4.38e-01 | 96.6% | 53.9% |
| 2462317 | 4205.1.1.2 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C | 0.69 | 55.0 | 3.71e-01 | 96.6% | 23.5% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.68 | 58.0 | 5.32e-01 | 93.2% | 90.7% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.67 | 59.0 | 5.00e-01 | 96.6% | 83.2% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.67 | 61.0 | 5.73e-01 | 98.3% | 82.9% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.67 | 60.0 | 5.51e-01 | 98.3% | 81.1% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.66 | 60.0 | 5.28e-01 | 100.0% | 77.6% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.66 | 59.0 | 5.55e-01 | 98.3% | 84.3% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.66 | 58.0 | 4.90e-01 | 98.3% | 69.1% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 57.0 | 4.90e-01 | 98.3% | 72.6% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.65 | 58.0 | 4.72e-01 | 100.0% | 61.8% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.65 | 56.0 | 4.61e-01 | 98.3% | 80.9% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 53.0 | 5.15e-01 | 89.8% | 96.9% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.65 | 58.0 | 5.12e-01 | 100.0% | 80.0% |
| 2449258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 56.0 | 4.13e-01 | 100.0% | 76.2% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 58.0 | 5.23e-01 | 100.0% | 90.0% |
| 4966182 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.64 | 55.0 | 4.38e-01 | 100.0% | 91.2% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 55.0 | 4.71e-01 | 96.6% | 62.8% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 55.0 | 4.49e-01 | 100.0% | 80.9% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 56.0 | 5.49e-01 | 100.0% | 100.0% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 54.0 | 5.56e-01 | 93.2% | 100.0% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.62 | 54.0 | 4.24e-01 | 100.0% | 55.2% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.62 | 53.0 | 5.19e-01 | 96.6% | 90.8% |
| 4011612 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.62 | 48.0 | 3.37e-01 | 84.7% | 61.6% |
| 3953218 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.61 | 54.0 | 3.99e-01 | 100.0% | 41.3% |
| 3955812 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.60 | 53.0 | 4.59e-01 | 100.0% | 65.6% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 53.0 | 4.61e-01 | 100.0% | 70.0% |
| 4113985 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.59 | 42.0 | 3.78e-01 | 79.7% | 52.9% |
| 4978741 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.59 | 47.0 | 3.70e-01 | 89.8% | 96.2% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.59 | 51.0 | 4.44e-01 | 100.0% | 67.4% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.59 | 50.0 | 4.81e-01 | 100.0% | 90.0% |
| 3952923 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.58 | 51.0 | 4.34e-01 | 100.0% | 63.0% |
| 1125246 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.58 | 36.0 | 3.36e-01 | 78.0% | 47.4% |
| 4991693 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.57 | 43.0 | 3.21e-01 | 83.1% | 31.6% |
| 4932931 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 37.0 | 3.03e-01 | 83.1% | 36.4% |
| 4984500 | 2004.1.1.343 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 | 0.56 | 40.0 | 2.46e-01 | 76.3% | 31.3% |
| 3577590 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 40.0 | 2.45e-01 | 79.7% | 28.9% |
| 3218708 | 378.1.2.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH | 0.54 | 41.0 | 3.85e-01 | 83.1% | 89.2% |
| 3599909 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 41.0 | 3.43e-01 | 86.4% | 51.8% |
| 3447934 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.53 | 43.0 | 3.68e-01 | 91.5% | 57.0% |
| 3716197 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 38.0 | 3.24e-01 | 83.1% | 45.0% |
| 4969692 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.53 | 38.0 | 2.97e-01 | 84.7% | 95.2% |
| 3232806 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.52 | 46.0 | 3.45e-01 | 100.0% | 59.3% |
| 3812232 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.52 | 41.0 | 3.12e-01 | 100.0% | 37.0% |
| 4637508 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.52 | 41.0 | 2.46e-01 | 84.7% | 68.3% |
| 5074132 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.52 | 38.0 | 3.12e-01 | 83.1% | 40.0% |
| 5048972 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.51 | 39.0 | 2.72e-01 | 84.7% | 55.3% |
| 4592824 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 39.0 | 2.73e-01 | 81.4% | 27.4% |
D2
medium
residues 60-121
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i10B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 42.0 | 3.40e-01 | 87.1% | 98.4% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.51 | 45.0 | 3.99e-01 | 100.0% | 75.0% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.51 | 41.0 | 3.22e-01 | 91.9% | 88.1% |
| 1un8A02 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.50 | 39.0 | 3.00e-01 | 98.4% | 80.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4575197 | 148.1.3.67 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA12 | 0.62 | 46.0 | 4.46e-01 | 100.0% | 71.4% |
| 4934210 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.51 | 41.0 | 2.71e-01 | 96.8% | 77.1% |