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MH553517.1__AXH50935.1__CPT_Scapp_006__00006

Bact-Vir

MH553517.1__AXH50935.1__CPT_Scapp_006__00006

Identity

Accession:
MH553517 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Scappvirus› Serratia_phage_Scapp

TaxID: 2282409

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-96
PDB
D2 high residues 102-164
PDB
Domain cluster: rep: MN536026.1__QIG56919.1__vBPaeSS2019XI_041__00041__D4-70
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.29e-01 96.8% 93.5%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.78e-01 90.5% 92.0%
3h3gA03 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.55 48.0 4.21e-01 100.0% 79.0%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.54 37.0 3.33e-01 71.4% 84.8%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 44.0 2.98e-01 95.2% 51.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.69e-01 88.9% 65.1%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.56e-01 82.5% 67.4%
3kbqB00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.52 42.0 3.21e-01 96.8% 92.9%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 38.0 3.43e-01 88.9% 57.0%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.63e-01 92.1% 38.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3812959 375.1.1.201 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 0.83 52.0 6.31e-01 71.4% 100.0%
3312874 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.78 52.0 5.75e-01 77.8% 88.0%
5004151 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 54.0 5.93e-01 73.0% 94.0%
3836858 375.3.1.4 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › Zn_ribbon_20 0.76 49.0 5.35e-01 73.0% 82.0%
3361170 375.1.1.201 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_20 0.75 51.0 5.66e-01 74.6% 90.0%
4970989 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 41.0 4.16e-01 76.2% 96.9%
3701084 316.1.1.14 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.56 47.0 3.51e-01 100.0% 58.7%
3503177 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.79e-01 100.0% 29.1%
3745904 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.50 35.0 3.33e-01 73.0% 76.0%
3729438 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.50 38.0 2.62e-01 84.1% 51.0%