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MH553517.1__AXH50959.1__CPT_Scapp_030__00029
Bact-VirMH553517.1__AXH50959.1__CPT_Scapp_030__00029
Identity
- Accession:
- MH553517 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 2282409
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-123
Domain cluster:
rep: MH553517.1__AXH50958.1__CPT_Scapp_029__00030__D31-122
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08748.18 best | Phage_TAC_4 | 60.5 | 2.70e-16 | 100.0% | 84.7% |
D2
high
residues 126-140_156-231
Domain cluster:
rep: MK095605.1__AZS06255.1__MED16_gp15__00015__D26-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08809.17 best | DUF1799 | 58.5 | 8.50e-16 | 84.6% | 92.5% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o7qA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.62 | 44.0 | 3.50e-01 | 74.7% | 78.1% |
| 2optA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 44.0 | 3.78e-01 | 74.7% | 55.6% |
| 3lvyE01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.60 | 53.0 | 4.41e-01 | 100.0% | 63.6% |
| 1k3rA01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.58 | 41.0 | 3.30e-01 | 97.8% | 36.1% |
| 6s10A01 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.57 | 39.0 | 3.83e-01 | 71.4% | 68.6% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.55 | 44.0 | 3.82e-01 | 87.9% | 91.1% |
| 3uh0A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 38.0 | 2.69e-01 | 97.8% | 22.3% |
| 3frqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 38.0 | 3.07e-01 | 73.6% | 45.7% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.53 | 42.0 | 4.31e-01 | 91.2% | 91.9% |
| 3zbhA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 34.0 | 3.51e-01 | 84.6% | 70.0% |
| 7wz5A01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 44.0 | 3.80e-01 | 98.9% | 88.1% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.51 | 41.0 | 4.00e-01 | 92.3% | 81.8% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.50 | 35.0 | 3.40e-01 | 90.1% | 64.1% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.50 | 44.0 | 3.60e-01 | 100.0% | 70.5% |
| 1hywA00 | 3.30.1580.10 | Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W | 0.50 | 32.0 | 3.76e-01 | 85.7% | 100.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259222 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.65 | 45.0 | 2.97e-01 | 73.6% | 64.3% |
| 4607020 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.59 | 38.0 | 3.28e-01 | 84.6% | 43.7% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.58 | 36.0 | 3.51e-01 | 84.6% | 55.2% |
| 4955372 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.87e-01 | 74.7% | 80.0% |
| 3199964 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.57 | 35.0 | 2.71e-01 | 90.1% | 28.9% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.57 | 37.0 | 3.48e-01 | 85.7% | 54.5% |
| 4629785 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.57 | 37.0 | 2.57e-01 | 85.7% | 20.7% |
| 3968504 | 632.7.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MgtC | 0.57 | 47.0 | 4.20e-01 | 91.2% | 77.7% |
| 5047150 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 37.0 | 2.81e-01 | 84.6% | 30.0% |
| 4976799 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 4.11e-01 | 96.7% | 73.7% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.57 | 36.0 | 2.43e-01 | 84.6% | 17.6% |
| 3602143 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.57 | 37.0 | 2.68e-01 | 85.7% | 25.0% |
| 326087 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.56 | 43.0 | 3.72e-01 | 81.3% | 51.7% |
| 5023516 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.56 | 36.0 | 2.68e-01 | 85.7% | 25.5% |
| 3798867 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.56 | 39.0 | 3.45e-01 | 73.6% | 59.3% |
| 3622076 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.55 | 39.0 | 3.64e-01 | 73.6% | 69.6% |
| 3853979 | 101.1.2.573 ↗ | alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel | 0.55 | 40.0 | 3.60e-01 | 95.6% | 54.6% |
| 3943772 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 35.0 | 2.79e-01 | 84.6% | 31.6% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 35.0 | 3.25e-01 | 84.6% | 50.8% |
| 5064040 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 36.0 | 2.73e-01 | 84.6% | 29.8% |
| 3712650 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.54 | 35.0 | 3.30e-01 | 85.7% | 54.5% |
| 5014739 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 4.30e-01 | 89.0% | 91.8% |
| 3933404 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 38.0 | 3.20e-01 | 73.6% | 93.3% |
| 5008813 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 45.0 | 3.73e-01 | 96.7% | 53.3% |