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MH571750.1__AXH65124.1__vBEcoMRo111lw_00086__00064

Bact-Vir

MH571750.1__AXH65124.1__vBEcoMRo111lw_00086__00064

Identity

Accession:
MH571750 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Felixounavirus› Escherichia_phage_vB_EcoM-Ro111lw

TaxID: 2282989

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-106
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.59e-01 79.6% 80.0%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 38.0 4.15e-01 93.2% 77.4%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.60 30.0 3.43e-01 75.7% 64.0%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.59 39.0 4.32e-01 77.7% 86.4%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 4.31e-01 91.3% 83.0%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 40.0 4.18e-01 100.0% 78.7%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 33.0 3.96e-01 75.7% 93.4%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.28e-01 93.2% 83.9%
1sk7A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.57 49.0 4.08e-01 97.1% 94.7%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 4.21e-01 91.3% 81.4%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.56 39.0 3.90e-01 85.4% 70.5%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 4.29e-01 77.7% 100.0%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 42.0 3.87e-01 81.6% 78.2%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.54 47.0 4.29e-01 98.1% 97.2%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 32.0 3.40e-01 91.3% 68.2%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 42.0 3.88e-01 88.3% 79.9%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 3.30e-01 81.6% 54.1%
7akwA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 41.0 3.22e-01 85.4% 77.9%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 35.0 3.62e-01 91.3% 73.0%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.91e-01 77.7% 91.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 30.0 3.47e-01 78.6% 79.7%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.61e-01 72.8% 80.9%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 38.0 3.82e-01 80.6% 91.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3918763 101.1.1.117 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.64 52.0 5.35e-01 89.3% 99.0%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 39.0 3.84e-01 70.9% 60.0%
3236728 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.58 48.0 4.14e-01 90.3% 72.7%
4201591 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.58 34.0 3.53e-01 90.3% 59.0%
3490487 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.58 46.0 4.59e-01 96.1% 83.8%
3181417 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.58 45.0 3.91e-01 85.4% 89.1%
3219325 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 45.0 4.02e-01 89.3% 69.0%
4648750 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.56 40.0 3.12e-01 73.8% 59.6%
4144086 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.56 32.0 3.27e-01 83.5% 56.0%
3282 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 46.0 4.21e-01 94.2% 82.3%
3985042 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.54 38.0 3.28e-01 73.8% 72.1%
3312407 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.52 39.0 2.85e-01 80.6% 54.9%
4977094 606.1.1.1 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.50 35.0 3.32e-01 72.8% 73.8%
D2 high residues 117-170
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 4.95e-01 72.2% 84.6%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.44e-01 74.1% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 53.0 5.43e-01 74.1% 98.1%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.31e-01 72.2% 98.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 52.0 5.03e-01 72.2% 98.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.73 51.0 5.10e-01 74.1% 90.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.72 55.0 5.45e-01 83.3% 89.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 4.50e-01 72.2% 86.1%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.70 50.0 4.58e-01 75.9% 100.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.29e-01 87.0% 83.3%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 4.84e-01 92.6% 93.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.69e-01 94.4% 77.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.29e-01 96.3% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.01e-01 96.3% 92.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 5.06e-01 96.3% 96.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.93e-01 96.3% 96.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.74e-01 100.0% 77.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.65e-01 98.1% 84.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 3.97e-01 75.9% 95.2%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.11e-01 98.1% 86.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 42.0 3.50e-01 87.0% 44.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.03e-01 77.8% 90.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.43e-01 94.4% 100.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.17e-01 94.4% 96.4%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.32e-01 70.4% 100.0%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.57e-01 75.9% 100.0%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 37.0 3.01e-01 85.2% 62.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.79 55.0 5.02e-01 72.2% 75.7%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 5.34e-01 75.9% 91.7%
3474075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 53.0 4.74e-01 72.2% 83.8%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.19e-01 72.2% 90.9%
547 4.1.1.49 ↗ beta barrels › SH3 › SH3 › SH3 › KorB_C 0.72 54.0 5.46e-01 81.5% 92.6%
3466927 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.70 49.0 4.13e-01 74.1% 74.4%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.70 54.0 5.26e-01 98.1% 76.7%
3788538 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 56.0 4.29e-01 92.6% 80.0%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.27e-01 94.4% 95.4%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 54.0 4.90e-01 96.3% 84.0%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.05e-01 98.1% 91.4%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 48.0 4.58e-01 100.0% 72.3%
3581719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 53.0 4.21e-01 100.0% 59.1%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 52.0 4.60e-01 100.0% 78.8%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 51.0 4.75e-01 98.1% 87.1%
3417443 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 47.0 4.38e-01 90.7% 88.4%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.59 50.0 4.16e-01 98.1% 62.0%
3484618 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 50.0 4.57e-01 100.0% 84.0%
4800750 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.56 42.0 3.05e-01 90.7% 61.3%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 47.0 4.57e-01 98.1% 96.7%
3247746 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.56 44.0 2.84e-01 94.4% 90.8%
3895018 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.55 37.0 3.61e-01 74.1% 100.0%
4030630 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.23e-01 81.5% 77.1%
3285025 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 36.0 2.57e-01 85.2% 52.7%