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MH576968.1__AXH67353.1__SEA_WOFFORD_212__00171

Bact-Vir

MH576968.1__AXH67353.1__SEA_WOFFORD_212__00171

Identity

Accession:
MH576968 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Karimacvirus› Streptomyces_phage_Wofford

TaxID: 2283267

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-42
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.87 78.0 6.05e-01 100.0% 51.8%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 76.0 5.95e-01 100.0% 50.6%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 75.0 7.01e-01 100.0% 80.4%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 64.0 5.66e-01 80.5% 94.8%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 73.0 6.78e-01 100.0% 86.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 73.0 6.72e-01 100.0% 90.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 6.51e-01 100.0% 76.8%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 69.0 6.09e-01 100.0% 82.5%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 70.0 6.19e-01 100.0% 83.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 71.0 6.05e-01 100.0% 63.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 70.0 6.09e-01 100.0% 85.9%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 69.0 5.51e-01 100.0% 52.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 67.0 6.45e-01 100.0% 83.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 67.0 6.05e-01 100.0% 85.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 68.0 6.07e-01 100.0% 86.9%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 69.0 6.01e-01 100.0% 70.3%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 60.0 5.36e-01 82.9% 93.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 5.82e-01 100.0% 63.6%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 66.0 5.79e-01 100.0% 85.9%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 68.0 5.91e-01 100.0% 66.7%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 60.0 5.27e-01 90.2% 58.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 4.84e-01 100.0% 43.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.60e-01 100.0% 77.4%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 55.0 4.67e-01 92.7% 61.6%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 52.0 4.49e-01 90.2% 62.2%
2mfiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 50.0 3.90e-01 82.9% 50.0%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.68 47.0 4.06e-01 73.2% 74.2%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 53.0 3.84e-01 92.7% 60.8%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 54.0 3.19e-01 100.0% 37.3%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 54.0 3.96e-01 100.0% 53.8%
5u25A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.79e-01 100.0% 73.8%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.31e-01 100.0% 72.0%
4oagB02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.60 47.0 3.16e-01 92.7% 80.1%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 42.0 4.01e-01 85.4% 66.7%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.56 40.0 3.83e-01 85.4% 64.7%
3t2lA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.17e-01 97.6% 84.2%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 43.0 4.27e-01 95.1% 93.5%
3eagA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 43.0 2.80e-01 97.6% 75.8%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 43.0 3.37e-01 100.0% 89.8%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 39.0 3.49e-01 87.8% 90.3%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 40.0 3.79e-01 95.1% 77.8%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 34.0 2.74e-01 70.7% 50.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 87.0 7.77e-01 100.0% 80.0%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.94 86.0 6.74e-01 100.0% 51.2%
3264809 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.93 84.0 7.54e-01 100.0% 76.4%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 79.0 6.45e-01 100.0% 72.0%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 70.0 7.13e-01 97.6% 87.5%
3569289 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.88 78.0 6.21e-01 100.0% 75.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.88 77.0 5.78e-01 100.0% 42.1%
4659299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 79.0 6.89e-01 100.0% 68.3%
3895018 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.87 79.0 6.71e-01 100.0% 89.2%
3778257 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.87 79.0 5.30e-01 100.0% 30.7%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.87 78.0 6.33e-01 100.0% 80.0%
2675860 4.1.1.15 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.87 77.0 5.51e-01 100.0% 39.5%
3621642 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.87 76.0 6.08e-01 100.0% 63.7%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.86 70.0 5.97e-01 100.0% 56.9%
3365131 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.86 69.0 7.04e-01 87.8% 95.0%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.86 76.0 6.06e-01 100.0% 75.0%
4473115 4.1.1.5 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e 0.86 77.0 5.70e-01 100.0% 41.0%
3777241 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 76.0 5.49e-01 100.0% 40.0%
3679595 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.85 74.0 6.13e-01 100.0% 70.3%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 74.0 6.33e-01 100.0% 61.5%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.85 77.0 5.85e-01 100.0% 54.4%
4975193 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.85 75.0 5.80e-01 100.0% 50.6%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 74.0 6.55e-01 100.0% 85.0%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.84 70.0 6.00e-01 100.0% 58.5%
3323551 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.84 73.0 6.29e-01 100.0% 80.0%
3323558 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.84 74.0 6.51e-01 100.0% 86.7%
4537356 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 73.0 6.46e-01 100.0% 96.7%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.83 74.0 4.63e-01 100.0% 19.5%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 72.0 6.24e-01 100.0% 81.5%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.83 73.0 6.24e-01 100.0% 65.2%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 72.0 6.05e-01 100.0% 72.9%
5038405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.19e-01 100.0% 77.8%
3574751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 71.0 6.67e-01 97.6% 98.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.82 71.0 6.48e-01 100.0% 72.7%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 69.0 5.74e-01 100.0% 80.0%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 71.0 6.48e-01 100.0% 74.5%
3224981 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 67.0 6.03e-01 100.0% 85.0%
3731630 4.8.1.36 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.80 60.0 5.29e-01 85.4% 56.7%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.79 66.0 6.29e-01 100.0% 80.0%
4053768 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.79 67.0 4.72e-01 92.7% 52.2%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 68.0 6.43e-01 100.0% 82.0%
3517131 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 65.0 6.56e-01 100.0% 100.0%
2723695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.72e-01 87.8% 75.6%
4881660 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.76 60.0 6.08e-01 95.1% 92.5%
4965926 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.75 58.0 4.93e-01 87.8% 84.3%
3242963 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.49e-01 100.0% 78.3%
4987060 2.1.1.109 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.72 55.0 4.36e-01 87.8% 87.8%
4986053 2.1.1.21 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.68 52.0 4.40e-01 87.8% 76.0%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.30e-01 100.0% 92.0%
4963768 375.1.1.354 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28086 0.66 50.0 5.28e-01 85.4% 100.0%
3841271 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 44.0 2.85e-01 73.2% 15.8%
3933174 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 47.0 4.20e-01 87.8% 58.3%
5042722 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.60 45.0 2.88e-01 87.8% 16.2%
3700076 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.60 42.0 2.49e-01 82.9% 55.6%
3610438 3257.1.1.0 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.55 40.0 2.70e-01 92.7% 53.0%
3272167 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.61e-01 100.0% 23.1%
3212905 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 34.0 3.59e-01 97.6% 93.3%