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MH579717.1__AXH68356.1__P021_gp47__00047
Bact-VirMH579717.1__AXH68356.1__P021_gp47__00047
Identity
- Accession:
- MH579717 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Pelagivirus›
Pelagibacter_phage_HTVC021P
TaxID: 2282994
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-104
Domain cluster:
rep: OQ414635.1__WDQ27573.1__EXVC032PBaldr_052__00052__D127-189
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 41.0 | 3.09e-01 | 75.8% | 42.8% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.57 | 40.0 | 3.57e-01 | 75.8% | 72.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 3.48e-01 | 75.8% | 87.1% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.50e-01 | 78.8% | 84.1% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.32e-01 | 77.3% | 56.4% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.50 | 33.0 | 3.22e-01 | 100.0% | 58.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929321 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 48.0 | 5.01e-01 | 100.0% | 95.0% |
| 3243722 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.61 | 37.0 | 3.29e-01 | 77.3% | 40.0% |
| 3174327 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.55 | 35.0 | 2.55e-01 | 100.0% | 22.6% |
| 3789329 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 2.95e-01 | 80.3% | 51.7% |
| 4003316 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.53 | 40.0 | 3.25e-01 | 80.3% | 76.0% |
| 5004281 | 4999.1.1.1 ↗ | beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX | 0.53 | 40.0 | 4.12e-01 | 81.8% | 95.0% |
| 3787050 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 39.0 | 3.49e-01 | 77.3% | 66.3% |
| 4024060 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.53 | 40.0 | 3.23e-01 | 83.3% | 98.5% |
| 3197151 | 101.1.8.10 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 | 0.52 | 36.0 | 2.86e-01 | 75.8% | 36.7% |