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MH588545.1__AXQ68961.1__CcrPW_gp422c__00422

Bact-Vir

MH588545.1__AXQ68961.1__CcrPW_gp422c__00422

Identity

Accession:
MH588545 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Colossusvirus› Caulobacter_phage_CcrPW

TaxID: 2283271

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: rep: MN505213.1__QGF20884.1__X__00022__D2-97
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.65e-01 71.4% 52.5%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 38.0 3.53e-01 71.4% 47.0%
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.62 45.0 4.07e-01 98.7% 55.5%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 50.0 4.45e-01 94.8% 63.0%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.55e-01 74.0% 51.9%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.59 43.0 4.06e-01 94.8% 61.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.58 48.0 4.12e-01 93.5% 78.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 26.0 2.86e-01 85.7% 45.3%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.18e-01 77.9% 61.0%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.56 48.0 3.81e-01 100.0% 64.3%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.29e-01 71.4% 49.2%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.65e-01 90.9% 66.2%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.71e-01 84.4% 58.3%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.40e-01 84.4% 72.7%
1aunA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.54 45.0 3.40e-01 96.1% 99.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.14e-01 98.7% 34.2%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.26e-01 84.4% 48.0%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.41e-01 75.3% 91.0%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.29e-01 87.0% 63.0%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.52 42.0 3.49e-01 90.9% 64.6%
1e94A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.47e-01 97.4% 90.2%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.58e-01 94.8% 86.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.53e-01 84.4% 70.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 46.0 3.89e-01 98.7% 100.0%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.37e-01 76.6% 75.2%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 42.0 3.33e-01 93.5% 56.2%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.42e-01 84.4% 79.5%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.35e-01 96.1% 44.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268675 5095.1.1.1 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.74 52.0 3.65e-01 74.0% 92.8%
3999814 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.67 52.0 3.99e-01 98.7% 37.1%
4972400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 38.0 4.75e-01 74.0% 100.0%
3928361 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.65 45.0 3.68e-01 72.7% 56.4%
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 43.0 3.61e-01 71.4% 41.6%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.62 42.0 3.57e-01 72.7% 41.4%
3272573 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 52.0 5.29e-01 94.8% 96.0%
3598219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.52e-01 71.4% 45.6%
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.60 38.0 3.80e-01 72.7% 62.5%
3700460 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 3.51e-01 71.4% 45.6%
183289 5084.1.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.58 48.0 3.92e-01 93.5% 66.4%
5037821 2011.1.1.18 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat 0.58 50.0 3.66e-01 100.0% 76.4%
3195147 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 44.0 3.42e-01 87.0% 84.9%
4018522 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.56 45.0 3.67e-01 90.9% 85.2%
3722832 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.56 46.0 3.82e-01 97.4% 50.4%
5039720 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.54 42.0 4.24e-01 84.4% 95.0%
1293436 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 41.0 3.41e-01 84.4% 73.7%
3599105 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.54 43.0 2.70e-01 93.5% 57.1%
3598939 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 43.0 2.71e-01 93.5% 57.1%
3466098 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.54 42.0 2.86e-01 100.0% 21.3%
3180498 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.54 44.0 4.21e-01 90.9% 86.5%
4940092 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.53 43.0 4.30e-01 89.6% 100.0%
3409342 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.53 44.0 3.71e-01 96.1% 72.1%
3193874 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.56e-01 84.4% 76.5%
4106356 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.52 44.0 3.77e-01 94.8% 86.9%
4968263 1.1.5.91 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C 0.52 37.0 2.77e-01 76.6% 62.3%
937 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.53e-01 85.7% 96.0%
3593811 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.87e-01 98.7% 86.4%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.52 44.0 3.52e-01 93.5% 99.4%
3744143 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.52 42.0 3.43e-01 89.6% 53.3%
4018801 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.50 35.0 3.04e-01 72.7% 71.2%
4519566 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.50 37.0 3.76e-01 81.8% 98.8%
D2 medium residues 81-203
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.51 23.0 3.09e-01 77.2% 87.3%