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MH588546.1__AXQ69025.1__CcrBL9_gp001__00001
Bact-VirMH588546.1__AXQ69025.1__CcrBL9_gp001__00001
Identity
- Accession:
- MH588546 ↗
- Kingdom:
- phage
Quality
85.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Jeanschmidtviridae›
Bertelyvirus›
Caulobacter_phage_CcrBL9
TaxID: 2283270
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-46
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6q2eA01 | 3.40.50.11840 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 1 | 0.69 | 58.0 | 4.70e-01 | 100.0% | 49.4% |
| 6ptzA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 50.0 | 3.78e-01 | 100.0% | 33.8% |
| 3nd5A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 52.0 | 3.68e-01 | 100.0% | 69.7% |
| 4m88A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 50.0 | 3.66e-01 | 100.0% | 32.9% |
| 1yt8A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.61 | 48.0 | 3.76e-01 | 100.0% | 38.9% |
| 1a9xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 48.0 | 3.70e-01 | 95.6% | 37.1% |
| 4yo7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 46.0 | 3.39e-01 | 100.0% | 30.0% |
| 3hbaA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 47.0 | 3.64e-01 | 100.0% | 36.5% |
| 5u9cC02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.60 | 48.0 | 4.16e-01 | 100.0% | 55.8% |
| 2dgmA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 49.0 | 3.06e-01 | 100.0% | 17.0% |
| 5kc8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 47.0 | 3.33e-01 | 100.0% | 26.5% |
| 4dg8A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.59 | 44.0 | 2.65e-01 | 100.0% | 9.9% |
| 1fpzC00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 48.0 | 3.30e-01 | 100.0% | 24.7% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 50.0 | 3.70e-01 | 100.0% | 38.7% |
| 3g68B01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 44.0 | 3.02e-01 | 95.6% | 20.4% |
| 7b7tA03 | 3.40.50.2030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.09e-01 | 100.0% | 24.7% |
| 1us5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 48.0 | 3.42e-01 | 100.0% | 91.1% |
| 7pliF02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.32e-01 | 100.0% | 45.7% |
| 3lopA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.32e-01 | 100.0% | 31.7% |
| 1yt8A01 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.56 | 45.0 | 3.65e-01 | 100.0% | 45.4% |
| 3icoA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 2.95e-01 | 100.0% | 19.7% |
| 1peaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 42.0 | 3.04e-01 | 100.0% | 25.6% |
| 7a8rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 3.00e-01 | 100.0% | 33.7% |
| 2a1fC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.54 | 43.0 | 2.84e-01 | 100.0% | 47.7% |
| 3p12A01 | 3.40.1650.10 | Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain | 0.54 | 44.0 | 3.33e-01 | 100.0% | 34.7% |
| 4a8jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 2.77e-01 | 100.0% | 21.3% |
| 1oywA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 3.23e-01 | 100.0% | 53.0% |
| 1o2dA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 3.10e-01 | 100.0% | 32.9% |
| 3euaF01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 42.0 | 3.07e-01 | 100.0% | 30.1% |
| 2b4lA01 | 3.40.190.100 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 | 0.53 | 39.0 | 3.08e-01 | 88.9% | 35.1% |
| 2bn4A01 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 46.0 | 3.11e-01 | 100.0% | 37.8% |
| 3tuiD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.79e-01 | 100.0% | 20.7% |
| 8kcaB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 2.73e-01 | 93.3% | 23.4% |
| 6epyA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.52 | 42.0 | 2.72e-01 | 100.0% | 55.9% |
| 3thxB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.51 | 41.0 | 3.01e-01 | 100.0% | 29.6% |
| 1urhA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.51 | 40.0 | 3.21e-01 | 100.0% | 53.0% |
| 1npdB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.51 | 42.0 | 3.11e-01 | 100.0% | 45.7% |
| 7ml0001 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.68e-01 | 100.0% | 32.2% |
| 2amlA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.50 | 40.0 | 2.97e-01 | 100.0% | 34.0% |
| 5crwA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 40.0 | 3.13e-01 | 100.0% | 73.1% |
| 3bmxA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.50 | 39.0 | 2.67e-01 | 97.8% | 20.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3395278 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.64 | 47.0 | 2.72e-01 | 82.2% | 9.2% |
| 3943513 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.64 | 54.0 | 3.82e-01 | 100.0% | 49.3% |
| 4015836 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.64 | 52.0 | 3.60e-01 | 100.0% | 28.0% |
| 4961012 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.62 | 51.0 | 3.22e-01 | 100.0% | 17.3% |
| 4883752 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.62 | 52.0 | 3.66e-01 | 100.0% | 69.8% |
| 3406075 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.62 | 51.0 | 3.58e-01 | 100.0% | 27.9% |
| 4128505 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.62 | 52.0 | 3.64e-01 | 100.0% | 28.1% |
| 3961342 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.59 | 47.0 | 3.17e-01 | 100.0% | 32.2% |
| 3554575 | 2007.2.3.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › CDKN3 | 0.58 | 47.0 | 3.24e-01 | 100.0% | 31.4% |
| 3967639 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.57 | 45.0 | 2.87e-01 | 93.3% | 23.6% |
| 3350588 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 41.0 | 2.76e-01 | 84.4% | 20.0% |
| 5001600 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.57 | 42.0 | 3.18e-01 | 100.0% | 29.2% |
| 4933221 | 2007.1.7.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH | 0.56 | 46.0 | 3.14e-01 | 100.0% | 23.1% |
| 3590339 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.56 | 45.0 | 3.19e-01 | 100.0% | 27.1% |
| 4948235 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 44.0 | 2.94e-01 | 100.0% | 26.2% |
| 3968447 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.55 | 39.0 | 2.28e-01 | 77.8% | 8.5% |
| 5079284 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.55 | 43.0 | 3.07e-01 | 100.0% | 26.9% |
| 3991555 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 42.0 | 2.96e-01 | 100.0% | 34.7% |
| 4014398 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.53 | 42.0 | 2.59e-01 | 100.0% | 27.2% |
| 5054799 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 40.0 | 3.20e-01 | 88.9% | 38.1% |
| 4069758 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.53 | 39.0 | 3.01e-01 | 97.8% | 31.5% |
| 3385997 | 7523.1.1.6 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Porphobil_deam | 0.52 | 37.0 | 2.62e-01 | 77.8% | 21.9% |
| 3269570 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.52 | 43.0 | 3.23e-01 | 100.0% | 35.4% |
| 2797418 | 2485.1.1.10 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DSBA | 0.51 | 40.0 | 3.31e-01 | 97.8% | 56.1% |
| 3594130 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.67e-01 | 100.0% | 28.4% |
| 3665216 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 40.0 | 2.55e-01 | 100.0% | 25.2% |
| 5031260 | 7523.1.1.23 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 | 0.51 | 40.0 | 2.77e-01 | 100.0% | 81.2% |
| 3285500 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.51 | 40.0 | 2.84e-01 | 95.6% | 25.5% |
| 3980829 | 7589.1.1.1 ↗ | a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › SBD_N | 0.51 | 39.0 | 2.56e-01 | 95.6% | 17.4% |
D2
medium
residues 53-110
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 32.9 | 8.60e-08 | 94.8% | 40.0% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 41.0 | 3.58e-01 | 70.7% | 95.5% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 49.0 | 4.56e-01 | 100.0% | 81.3% |
| 5nx5B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 39.0 | 2.56e-01 | 75.9% | 16.8% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 48.0 | 4.44e-01 | 100.0% | 82.4% |
| 2l1pA00 | 1.10.260.70 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › SATB, CULT domain | 0.52 | 42.0 | 3.93e-01 | 100.0% | 73.5% |
| 1d0cA03 | 3.90.1230.10 | Alpha Beta › Alpha-Beta Complex › Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 › Nitric Oxide Synthase; Chain A, domain 3 | 0.52 | 40.0 | 3.48e-01 | 94.8% | 55.1% |
| 6mcjA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.51 | 40.0 | 3.16e-01 | 94.8% | 85.5% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.50 | 43.0 | 4.15e-01 | 100.0% | 89.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.96 | 88.0 | 5.96e-01 | 96.6% | 31.1% |
| 4975080 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.95 | 90.0 | 6.04e-01 | 100.0% | 34.1% |
| 3362021 | 397.3.1.0 ↗ | few secondary structure elements › Toxic hairpin › Pollen allergen ole e 6 › Pollen allergen ole e 6 | 0.64 | 38.0 | 4.68e-01 | 89.7% | 100.0% |
| 5000719 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 51.0 | 4.73e-01 | 100.0% | 77.5% |
| 4992091 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.61 | 42.0 | 2.48e-01 | 72.4% | 54.4% |
| 4003475 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.60 | 37.0 | 3.11e-01 | 86.2% | 36.0% |
| 3595457 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 43.0 | 3.75e-01 | 100.0% | 48.9% |
| 5017330 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 3.82e-01 | 100.0% | 49.6% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.56 | 38.0 | 2.87e-01 | 72.4% | 78.8% |
| 3352144 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 36.0 | 3.07e-01 | 96.6% | 38.0% |
| 4989878 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.55 | 47.0 | 2.74e-01 | 100.0% | 66.6% |