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MH588546.1__AXQ69429.1__CcrBL9_gp405__00405

Bact-Vir

MH588546.1__AXQ69429.1__CcrBL9_gp405__00405

Identity

Accession:
MH588546 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-135
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 53.0 5.84e-01 100.0% 85.5%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 44.0 4.99e-01 100.0% 86.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.68 46.0 4.75e-01 100.0% 72.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.52e-01 100.0% 68.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.39e-01 100.0% 68.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 40.0 4.56e-01 100.0% 91.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.45e-01 100.0% 84.9%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.15e-01 100.0% 85.5%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.57 37.0 3.87e-01 88.2% 72.6%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.57 36.0 3.59e-01 86.8% 62.3%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.95e-01 92.6% 70.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.88e-01 100.0% 62.8%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.95e-01 100.0% 67.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.18e-01 100.0% 80.0%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.45e-01 100.0% 91.0%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.54 40.0 3.20e-01 100.0% 37.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.11e-01 100.0% 84.8%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.82e-01 100.0% 66.3%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 34.0 3.38e-01 83.8% 61.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.31e-01 100.0% 88.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.34e-01 100.0% 91.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 38.0 3.36e-01 76.5% 75.3%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.78e-01 85.3% 82.0%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.62e-01 100.0% 97.0%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 32.0 3.26e-01 85.3% 62.3%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 4.40e-01 100.0% 98.5%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.51 45.0 3.86e-01 100.0% 89.1%
7emyA04 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 40.0 2.55e-01 86.8% 60.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017956 109.1.1.35 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.74 50.0 3.30e-01 100.0% 17.5%
5063311 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.73 45.0 5.23e-01 98.5% 93.3%
3263031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.54e-01 100.0% 69.2%
4890012 2484.1.1.209 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.67 42.0 3.37e-01 97.1% 32.8%
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.66 42.0 4.63e-01 100.0% 88.0%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.65 40.0 4.44e-01 98.5% 84.0%
3929260 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.64e-01 100.0% 87.3%
4965186 4.33.1.0 beta barrels › SH3 0.62 53.0 5.06e-01 100.0% 78.8%
4013462 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 38.0 2.50e-01 85.3% 16.6%
3693649 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 42.0 3.17e-01 85.3% 80.0%
1837476 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 34.0 3.46e-01 83.8% 65.7%
5011603 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 45.0 4.33e-01 95.6% 88.7%
3269367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.80e-01 89.7% 87.4%
5037599 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.91e-01 95.6% 26.6%
3695728 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 44.0 2.69e-01 98.5% 47.7%
3174658 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.67e-01 85.3% 67.8%
D2 medium residues 154-185
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.95 84.0 6.53e-01 100.0% 48.5%
3dzaA02 6.10.250.2140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.94 82.0 6.46e-01 96.9% 50.0%
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.93 81.0 6.19e-01 100.0% 45.1%
1t3dA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.92 80.0 5.12e-01 100.0% 22.9%
1iipA02 1.10.150.160 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.91 79.0 5.74e-01 100.0% 54.1%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.90 78.0 4.94e-01 100.0% 21.9%
4i1aA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.90 79.0 4.54e-01 100.0% 11.7%
4houB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.87 73.0 4.30e-01 100.0% 13.2%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.87 73.0 4.72e-01 100.0% 22.8%
4lzgA01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.87 73.0 5.27e-01 100.0% 34.4%
5fzsA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.86 71.0 4.99e-01 100.0% 29.9%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 72.0 4.70e-01 100.0% 22.7%
4gywA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.85 71.0 5.01e-01 100.0% 30.5%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.84 69.0 6.07e-01 100.0% 61.5%
1lf6A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.84 70.0 3.88e-01 96.9% 11.7%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 72.0 5.93e-01 100.0% 54.2%
8fnyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 70.0 4.25e-01 100.0% 15.5%
3ziuA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.84 67.0 4.04e-01 100.0% 14.0%
1oq4A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.83 68.0 3.83e-01 96.9% 9.2%
1ca1A01 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.83 70.0 4.14e-01 100.0% 14.0%
4cmyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.82 68.0 4.33e-01 100.0% 19.6%
4wnfA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 67.0 3.98e-01 100.0% 12.5%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.82 70.0 4.64e-01 100.0% 24.4%
4xi0F00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 71.0 4.42e-01 100.0% 18.0%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.81 65.0 4.72e-01 100.0% 32.7%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 68.0 5.85e-01 100.0% 60.4%
2fbaA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.79 64.0 3.53e-01 100.0% 20.9%
3as5A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.79 63.0 3.97e-01 96.9% 18.0%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.78 63.0 4.32e-01 100.0% 26.6%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.78 64.0 4.41e-01 100.0% 27.1%
1vh6A01 6.10.140.1940 Special › Helix non-globular › Helix Hairpins › 0.76 62.0 4.53e-01 100.0% 33.0%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.69 54.0 3.85e-01 100.0% 29.3%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.66 47.0 3.19e-01 100.0% 18.2%
2va8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 49.0 4.28e-01 100.0% 55.4%
5kfzA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 46.0 3.94e-01 96.9% 51.7%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034119 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.98 90.0 5.30e-01 100.0% 16.0%
4981760 7516.1.1.51 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 0.96 86.0 4.74e-01 100.0% 8.4%
3950387 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.93 80.0 4.83e-01 100.0% 16.4%
3651090 2002.1.1.95 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pantoate_transf 0.92 82.0 4.61e-01 100.0% 10.5%
3178691 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.91 81.0 4.97e-01 100.0% 18.8%
3866937 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.90 78.0 5.10e-01 100.0% 24.6%
3956423 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.89 75.0 5.11e-01 100.0% 27.8%
4993041 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.88 74.0 5.56e-01 100.0% 40.0%
5060559 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.88 75.0 6.14e-01 100.0% 53.3%
3360337 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.87 74.0 6.97e-01 100.0% 80.0%
3347263 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.87 73.0 4.39e-01 100.0% 14.5%
5010716 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.87 75.0 4.80e-01 100.0% 22.1%
4173822 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.86 70.0 4.59e-01 100.0% 31.7%
3630197 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.86 69.0 4.07e-01 93.8% 12.2%
5060848 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.86 72.0 5.94e-01 100.0% 55.0%
4981470 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.86 72.0 4.56e-01 100.0% 19.4%
3229971 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 70.0 4.24e-01 96.9% 14.9%
5056592 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 73.0 4.08e-01 100.0% 8.9%
3193336 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.85 69.0 4.62e-01 93.8% 25.0%
4543016 109.4.1.1690 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17, TPR_16 0.85 73.0 4.72e-01 100.0% 22.9%
3267006 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 67.0 4.33e-01 93.8% 19.6%
3657412 109.4.1.1347 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16, TPR_19 0.84 69.0 4.35e-01 100.0% 18.3%
3443361 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.84 69.0 4.33e-01 100.0% 18.3%
4235209 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.84 69.0 4.37e-01 100.0% 19.4%
5076762 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 69.0 4.63e-01 100.0% 24.6%
3700618 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 69.0 4.86e-01 96.9% 31.0%
3999857 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.83 69.0 5.37e-01 100.0% 57.3%
3829175 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.83 69.0 4.70e-01 100.0% 26.7%
3374699 604.12.1.7 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1_C 0.83 69.0 6.31e-01 100.0% 84.4%
5046679 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.83 69.0 5.45e-01 100.0% 47.1%
3584523 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.83 68.0 4.36e-01 100.0% 20.0%
4204341 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.83 69.0 3.89e-01 96.9% 10.0%
5030918 632.11.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.83 68.0 5.19e-01 100.0% 40.0%
2856784 109.2.1.42 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.81 66.0 3.83e-01 100.0% 10.7%
3316389 4.8.1.44 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF3119 0.78 65.0 4.29e-01 100.0% 76.4%
3670473 220.1.1.227 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3119 0.78 64.0 4.26e-01 100.0% 77.1%
3280908 4274.1.1.5 extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › PF28792 0.77 59.0 5.16e-01 100.0% 53.3%
3652772 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 58.0 3.29e-01 93.8% 7.8%