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MH588546.1__AXQ69443.1__CcrBL9_gp419__00419

Bact-Vir

MH588546.1__AXQ69443.1__CcrBL9_gp419__00419

Identity

Accession:
MH588546 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrBL9

TaxID: 2283270

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-44
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.85 74.0 6.50e-01 100.0% 66.7%
4zjpA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.79 70.0 4.72e-01 100.0% 33.3%
6gt9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.76 69.0 4.47e-01 100.0% 27.6%
2rjoA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.76 66.0 4.34e-01 100.0% 27.7%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.75 58.0 4.29e-01 87.8% 34.3%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.75 68.0 4.43e-01 100.0% 29.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.74 63.0 3.95e-01 100.0% 18.6%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 53.0 4.41e-01 78.0% 54.1%
4rsmA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.72 62.0 4.22e-01 100.0% 32.0%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.70 52.0 3.72e-01 80.5% 35.9%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 50.0 3.43e-01 80.5% 24.3%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.69 59.0 3.81e-01 100.0% 55.8%
4hdrB02 3.40.50.10210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain 0.69 55.0 3.43e-01 95.1% 36.5%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 52.0 3.17e-01 90.2% 15.3%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 56.0 3.97e-01 100.0% 37.5%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 52.0 3.85e-01 97.6% 75.0%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.60 44.0 4.34e-01 87.8% 73.3%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.44e-01 100.0% 79.4%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 45.0 3.94e-01 100.0% 58.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.70e-01 100.0% 57.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4407662 6028.1.1.1 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF 0.92 81.0 7.06e-01 100.0% 66.7%
3581419 6028.1.1.0 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.86 73.0 7.39e-01 95.1% 92.5%
3778661 109.23.1.9 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › ANATO 0.82 73.0 5.24e-01 100.0% 36.0%
3852964 101.1.17.14 ↗ alpha arrays › HTH › HTH › FF domain › ANATO 0.80 71.0 5.78e-01 100.0% 54.7%
3733115 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.68 47.0 2.60e-01 73.2% 13.3%
4020549 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.66 56.0 4.27e-01 100.0% 43.0%
3970898 6119.1.1.0 ↗ alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB 0.61 50.0 4.70e-01 90.2% 94.0%
4045754 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.61 47.0 3.49e-01 85.4% 86.7%
3969065 4168.1.1.1 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.61 54.0 4.87e-01 100.0% 78.2%
3668680 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.60 45.0 3.39e-01 80.5% 36.0%
4449595 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.57 48.0 2.66e-01 97.6% 6.7%
4266784 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.56 49.0 2.70e-01 100.0% 6.4%
3201508 101.1.17.34 ↗ alpha arrays › HTH › HTH › FF domain › Sds3 0.55 42.0 3.65e-01 100.0% 68.8%
3977881 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 41.0 2.79e-01 82.9% 84.4%
3623548 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.55 42.0 3.44e-01 100.0% 72.6%