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MH588546.1__AXQ69510.1__CcrBL9_gp486__00486

Bact-Vir

MH588546.1__AXQ69510.1__CcrBL9_gp486__00486

Identity

Accession:
MH588546 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrBL9

TaxID: 2283270

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-119
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.60 50.0 4.34e-01 93.1% 91.1%
7jpxA02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.52 32.0 3.25e-01 88.8% 59.5%
1mswD04 1.10.287.280 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 28.0 3.24e-01 87.9% 74.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025289 192.29.1.197 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.58 30.0 3.41e-01 76.7% 65.9%
3574720 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.54 40.0 3.75e-01 77.6% 74.5%
4978274 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.54 26.0 2.68e-01 77.6% 44.3%
D2 high residues 136-247
PDB
Domain cluster: rep: Salt_Pond_R2_C_D2_MG_scaffold_7_prodigal-single.1__X__X__00234__D180-301
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.74 50.0 5.55e-01 92.0% 86.7%
1s7kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 53.0 4.75e-01 85.7% 65.8%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.64 47.0 4.53e-01 86.6% 67.5%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 44.0 4.12e-01 72.3% 78.9%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 37.0 4.27e-01 71.4% 82.9%
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 51.0 4.82e-01 92.9% 97.0%
7vt9A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 32.0 3.87e-01 78.6% 84.9%
4ab7H02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.72e-01 75.9% 63.8%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 49.0 3.68e-01 100.0% 74.2%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 37.0 3.19e-01 71.4% 77.3%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 36.0 3.96e-01 81.2% 86.7%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 28.0 3.26e-01 70.5% 71.1%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 46.0 4.00e-01 99.1% 99.4%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.96e-01 85.7% 74.0%
7pk0A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.77e-01 81.2% 72.3%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.45e-01 92.9% 66.8%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 44.0 3.29e-01 98.2% 76.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1348267 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.74 51.0 5.56e-01 97.3% 86.8%
3056107 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 34.0 3.52e-01 73.2% 59.0%
3248667 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 44.0 3.71e-01 96.4% 47.4%
5019856 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 36.0 4.08e-01 92.0% 82.4%
None — 0.57 51.0 3.74e-01 100.0% 91.7%
1190350 213.1.1.11 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.57 41.0 3.78e-01 75.9% 64.2%
3670829 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 49.0 3.61e-01 100.0% 89.1%
3899940 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.56 37.0 4.26e-01 95.5% 95.0%
3823559 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 49.0 3.67e-01 99.1% 82.3%
3448857 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 49.0 3.51e-01 100.0% 65.6%
3804709 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 47.0 3.53e-01 97.3% 93.5%
3447587 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 48.0 3.54e-01 100.0% 75.1%
3804813 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 48.0 3.59e-01 99.1% 84.1%
5048688 288.1.1.2 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.54 38.0 3.32e-01 71.4% 97.0%
3656110 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 47.0 3.43e-01 100.0% 92.2%
4941377 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.54 44.0 4.01e-01 91.1% 66.0%
3432908 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 47.0 3.43e-01 100.0% 82.1%
3382673 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 47.0 3.51e-01 100.0% 81.6%
3653935 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 47.0 3.43e-01 100.0% 96.1%
3212817 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 36.0 3.27e-01 83.0% 52.7%
3442715 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 46.0 3.36e-01 96.4% 68.9%
3856485 213.1.1.16 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 40.0 3.49e-01 81.2% 53.7%
3440332 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 46.0 3.20e-01 100.0% 77.7%
3903931 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 45.0 3.33e-01 98.2% 79.6%
3196254 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 41.0 3.82e-01 86.6% 71.0%
3408978 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.52 41.0 3.78e-01 86.6% 64.7%
3260659 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 44.0 3.15e-01 100.0% 75.7%
3640732 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.52 41.0 3.93e-01 86.6% 77.0%
3609237 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.19e-01 100.0% 76.7%