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MH588547.2__AXQ70048.1__CcrSC_gp466__00465

Bact-Vir

MH588547.2__AXQ70048.1__CcrSC_gp466__00465

Identity

Accession:
MH588547 ↗
Kingdom:
phage

Quality

55.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 114-165
PDB
D2 medium residues 4-65
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.73 63.0 4.54e-01 100.0% 34.6%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.72 57.0 4.30e-01 85.5% 70.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.23e-01 88.7% 28.8%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.66 47.0 3.74e-01 75.8% 75.4%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 57.0 4.81e-01 100.0% 88.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.64 54.0 4.50e-01 95.2% 67.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 46.0 4.16e-01 77.4% 80.5%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 50.0 3.12e-01 87.1% 90.7%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.62 50.0 3.03e-01 91.9% 23.8%
2pd0A01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.61 44.0 3.61e-01 77.4% 65.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 44.0 4.54e-01 79.0% 95.0%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.18e-01 98.4% 92.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.75e-01 79.0% 66.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.60 50.0 4.08e-01 93.5% 63.9%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.17e-01 98.4% 91.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 49.0 3.30e-01 100.0% 92.1%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 51.0 3.73e-01 98.4% 69.3%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 4.05e-01 98.4% 70.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 46.0 3.41e-01 87.1% 32.2%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 3.63e-01 100.0% 45.1%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.58 42.0 4.38e-01 85.5% 86.2%
2zo4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 45.0 3.01e-01 87.1% 63.5%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 42.0 2.98e-01 80.6% 64.1%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.82e-01 98.4% 73.3%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.57 47.0 3.50e-01 98.4% 66.5%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.57 49.0 3.56e-01 100.0% 77.8%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.57 47.0 3.07e-01 95.2% 95.1%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 47.0 3.87e-01 96.8% 57.5%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.56 42.0 3.35e-01 83.9% 39.3%
4cvqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 45.0 3.43e-01 95.2% 55.6%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.55 47.0 3.78e-01 96.8% 80.2%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 2.68e-01 93.5% 10.4%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 44.0 3.65e-01 93.5% 79.3%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 3.59e-01 83.9% 86.5%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.47e-01 96.8% 76.2%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 2.72e-01 91.9% 79.2%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 43.0 3.51e-01 100.0% 79.0%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 45.0 2.98e-01 100.0% 21.9%
2douB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.49e-01 100.0% 55.0%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.82e-01 100.0% 87.2%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.52e-01 93.5% 79.1%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.52 42.0 3.66e-01 100.0% 57.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 42.0 3.92e-01 96.8% 92.8%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 39.0 3.54e-01 83.9% 69.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.61e-01 98.4% 67.6%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.50 37.0 3.26e-01 80.6% 71.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246551 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.74 66.0 3.99e-01 100.0% 22.0%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.71 54.0 4.56e-01 90.3% 50.0%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.70 62.0 5.75e-01 100.0% 93.8%
3207771 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.70 54.0 3.79e-01 83.9% 41.5%
3596085 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.69 48.0 4.41e-01 72.6% 62.5%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.69 59.0 4.58e-01 95.2% 56.3%
4024746 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.69 52.0 3.55e-01 82.3% 87.0%
5055697 5.1.4.668 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CGLA 0.69 50.0 3.16e-01 77.4% 36.0%
4052154 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.69 58.0 4.21e-01 93.5% 40.6%
3931122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 50.0 4.33e-01 77.4% 71.6%
4681650 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.68 54.0 3.92e-01 87.1% 32.6%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.68 59.0 5.32e-01 98.4% 90.9%
5022798 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 52.0 3.06e-01 82.3% 14.1%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.68 49.0 4.11e-01 77.4% 59.1%
3244243 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 54.0 3.80e-01 93.5% 27.2%
4064755 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.67 54.0 3.90e-01 87.1% 31.8%
3301602 5.1.2.41 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.67 50.0 3.64e-01 80.6% 54.4%
3782385 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.67 54.0 3.20e-01 87.1% 73.1%
3775274 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 51.0 3.11e-01 82.3% 19.2%
3399727 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 51.0 3.12e-01 82.3% 20.5%
3939218 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 50.0 3.09e-01 80.6% 20.8%
4028413 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 52.0 3.24e-01 85.5% 56.9%
3238618 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.67 51.0 3.12e-01 82.3% 20.9%
3324429 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.66 58.0 4.39e-01 98.4% 44.0%
4298074 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 53.0 3.83e-01 87.1% 42.3%
3571692 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 50.0 3.08e-01 82.3% 20.6%
3574641 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 50.0 3.45e-01 82.3% 35.0%
3500968 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 49.0 3.03e-01 80.6% 19.5%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 51.0 3.45e-01 95.2% 21.2%
4127270 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.66 53.0 3.81e-01 87.1% 42.0%
4220972 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 52.0 3.19e-01 85.5% 23.3%
3400083 5.1.5.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.65 50.0 3.16e-01 80.6% 96.7%
1146605 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.65 52.0 3.71e-01 87.1% 31.5%
3478519 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.64 47.0 3.64e-01 77.4% 57.9%
3752441 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 53.0 4.44e-01 100.0% 79.2%
3244907 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.05e-01 77.4% 77.8%
3962189 375.13.1.0 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.62 48.0 4.81e-01 87.1% 87.7%
3589839 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.62 49.0 3.10e-01 87.1% 17.3%
3796233 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.32e-01 100.0% 87.2%
2323829 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.61 50.0 3.76e-01 93.5% 47.2%
3211631 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 51.0 3.42e-01 93.5% 24.9%
2462227 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 54.0 4.19e-01 98.4% 91.7%
3430171 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.08e-01 100.0% 20.4%
4311063 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.60 47.0 3.45e-01 87.1% 30.6%
5069827 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.60 53.0 3.27e-01 100.0% 95.3%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 45.0 3.87e-01 80.6% 74.0%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 43.0 3.32e-01 75.8% 92.9%
4135248 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 52.0 4.08e-01 96.8% 93.1%
3741960 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.59 46.0 2.98e-01 90.3% 38.5%
3824503 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.58 50.0 3.27e-01 96.8% 97.9%
3327101 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.58 40.0 3.75e-01 74.2% 71.2%
4943617 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.01e-01 98.4% 95.2%
2265 702.1.1.4 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.57 42.0 3.27e-01 85.5% 33.6%
3832069 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 41.0 4.13e-01 80.6% 83.1%
5073265 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 48.0 3.95e-01 98.4% 94.8%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.54 42.0 4.34e-01 90.3% 93.3%
4026983 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.53 44.0 3.13e-01 98.4% 40.0%
3780250 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.53 44.0 2.89e-01 93.5% 95.2%
3220737 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.53 41.0 2.79e-01 91.9% 21.5%
3881061 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 39.0 3.95e-01 95.2% 83.1%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 34.0 3.28e-01 82.3% 58.7%
3800040 5.1.4.422 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.51 43.0 3.00e-01 98.4% 77.8%