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MH590603.1__AXH70394.1__SEA_DAREDEVIL_6__00006

Bact-Vir

MH590603.1__AXH70394.1__SEA_DAREDEVIL_6__00006

Identity

Accession:
MH590603 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.72 54.0 4.89e-01 100.0% 59.1%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 48.0 4.51e-01 100.0% 59.0%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 57.0 4.89e-01 100.0% 58.9%
3gkuA01 3.30.30.80 Alpha Beta › 2-Layer Sandwich › Defensin A-like › probable RNA-binding protein from clostridium symbiosum atcc 14940 0.67 49.0 5.38e-01 100.0% 98.1%
3n01A00 3.30.70.2470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain 0.66 45.0 4.23e-01 100.0% 56.3%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 48.0 3.83e-01 100.0% 37.2%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 4.17e-01 100.0% 51.4%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 57.0 3.95e-01 100.0% 29.7%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.61 54.0 4.12e-01 100.0% 87.3%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.61 54.0 4.49e-01 100.0% 99.1%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 47.0 4.31e-01 100.0% 63.0%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.75e-01 100.0% 53.3%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.60 43.0 3.32e-01 100.0% 31.2%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 43.0 4.24e-01 100.0% 70.3%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.54e-01 100.0% 51.8%
1scjB00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.58 37.0 3.73e-01 100.0% 62.0%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.78e-01 100.0% 54.5%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.56 43.0 3.23e-01 100.0% 31.3%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 46.0 3.76e-01 98.5% 70.0%
4wiqA02 3.30.70.1040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dystroglycan, domain 2 0.55 47.0 3.91e-01 100.0% 56.0%
3qqmA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 4.32e-01 100.0% 80.5%
1euvB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.38e-01 100.0% 81.0%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.15e-01 100.0% 31.9%
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 2.97e-01 100.0% 25.7%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.54 40.0 3.44e-01 100.0% 50.0%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.54 39.0 2.71e-01 77.6% 39.9%
2bghA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 45.0 3.32e-01 100.0% 58.5%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.63e-01 100.0% 61.5%
4hpmD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 43.0 4.07e-01 98.5% 86.6%
3hwcA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 42.0 3.52e-01 97.0% 72.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3645120 304.8.1.55 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C 0.73 56.0 4.85e-01 100.0% 53.3%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.72 65.0 5.77e-01 100.0% 98.9%
3330535 304.8.1.55 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C 0.72 55.0 5.31e-01 100.0% 74.7%
4003789 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.71 54.0 4.52e-01 100.0% 46.7%
4604674 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.71 50.0 3.89e-01 100.0% 34.5%
5020745 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.70 63.0 5.60e-01 100.0% 98.9%
5049809 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.69 52.0 4.68e-01 100.0% 57.9%
3959517 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.69 62.0 5.86e-01 100.0% 93.8%
5079994 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.68 51.0 4.64e-01 100.0% 57.9%
3205089 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.68 57.0 5.81e-01 98.5% 96.9%
4937574 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.67 50.0 4.72e-01 100.0% 64.7%
4211027 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.67 54.0 3.74e-01 100.0% 26.2%
4968748 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.67 50.0 4.53e-01 100.0% 57.9%
3687652 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.67 57.0 5.70e-01 100.0% 92.9%
3560539 11.1.1.633 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA0319 0.67 50.0 4.48e-01 100.0% 56.0%
3891889 11.1.1.633 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA0319 0.66 50.0 3.96e-01 100.0% 38.6%
3703942 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.66 48.0 4.17e-01 100.0% 50.5%
4599303 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.65 50.0 3.41e-01 100.0% 22.8%
3592492 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.64 49.0 4.05e-01 100.0% 45.6%
4491254 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.64 50.0 3.01e-01 88.1% 66.2%
4608282 2484.1.1.70 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FtsA 0.64 55.0 3.46e-01 100.0% 18.2%
3764981 109.4.1.439 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NYD-SP12_N 0.63 56.0 3.40e-01 100.0% 15.4%
3512337 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.63 51.0 5.13e-01 100.0% 88.6%
3970675 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 48.0 3.63e-01 100.0% 32.2%
4631405 304.55.2.7 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.63 49.0 3.35e-01 100.0% 22.8%
4339487 304.55.2.7 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.62 48.0 3.38e-01 100.0% 25.3%
4572176 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.62 43.0 4.18e-01 100.0% 65.3%
3963401 2484.1.1.61 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.62 48.0 3.61e-01 100.0% 32.8%
3829359 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 47.0 4.41e-01 100.0% 67.1%
1824495 2484.1.1.61 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 0.61 47.0 3.53e-01 100.0% 32.0%
3236767 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 53.0 4.69e-01 100.0% 67.4%
3386169 304.55.2.7 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.61 46.0 3.26e-01 100.0% 25.6%
3987654 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.60 46.0 3.20e-01 100.0% 24.0%
3658810 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.60 42.0 4.04e-01 100.0% 63.7%
3962202 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.58 43.0 3.61e-01 79.1% 50.4%
3821846 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 49.0 4.26e-01 100.0% 59.1%
4478130 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.58 45.0 3.25e-01 100.0% 29.6%
3612282 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.58 41.0 3.58e-01 100.0% 46.4%
3974708 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.21e-01 71.6% 96.8%
4997602 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 45.0 3.91e-01 100.0% 55.2%
3616815 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.57 41.0 4.32e-01 100.0% 88.3%
3405258 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 50.0 3.52e-01 100.0% 37.4%
5035479 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 43.0 3.93e-01 100.0% 61.1%
3726037 304.25.1.2 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › AtuA 0.57 47.0 3.96e-01 100.0% 53.3%
2101210 304.51.1.5 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 0.56 43.0 3.99e-01 100.0% 64.0%
3576469 304.49.1.0 a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 0.56 49.0 4.00e-01 100.0% 56.2%
3738781 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.56 48.0 3.64e-01 100.0% 45.3%
3558877 304.49.1.2 a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › a_DG1_N2 0.55 48.0 3.81e-01 100.0% 48.3%
3632224 810.1.1.0 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.55 42.0 3.62e-01 100.0% 49.6%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.55 37.0 3.34e-01 71.6% 91.0%
3996557 304.49.1.0 a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 0.54 46.0 3.86e-01 100.0% 58.4%
5071468 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.13e-01 82.1% 39.2%
3170546 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 44.0 3.65e-01 100.0% 50.4%
3225707 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 38.0 3.79e-01 94.0% 71.4%
3176582 304.131.1.1 a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain › Phosphodiest 0.53 41.0 3.45e-01 100.0% 48.3%
1030952 2003.1.5.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GCD14 0.53 41.0 3.10e-01 100.0% 33.0%
3736643 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 45.0 3.85e-01 100.0% 59.1%
3687000 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 45.0 3.05e-01 100.0% 38.5%
3992045 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.51 42.0 4.34e-01 97.0% 96.9%
3958521 304.4.1.10 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF1330 0.50 41.0 3.45e-01 100.0% 51.7%