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MH590603.1__AXH70396.1__SEA_DAREDEVIL_8__00008

Bact-Vir

MH590603.1__AXH70396.1__SEA_DAREDEVIL_8__00008

Identity

Accession:
MH590603 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Daredevilvirus› Gordonia_phage_Daredevil

TaxID: 2283286

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-129
PDB
Domain cluster: rep: IMGVR_UViG_3300018080_003942-3300018080-Ga0180433_1000026952__D102-155
D2 medium residues 9-67
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 54.0 4.60e-01 100.0% 52.1%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.65 51.0 3.97e-01 86.4% 74.0%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 55.0 4.55e-01 100.0% 71.7%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 52.0 4.46e-01 98.3% 57.4%
1biqA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 52.0 3.23e-01 98.3% 18.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 27.0 1.83e-01 78.0% 10.8%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 34.0 3.08e-01 81.4% 48.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 36.0 2.69e-01 88.1% 28.0%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 33.0 3.06e-01 81.4% 50.7%
1igrA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.53 36.0 2.69e-01 74.6% 100.0%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 41.0 3.13e-01 84.7% 38.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3443644 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.84 59.0 3.60e-01 72.9% 14.3%
3780716 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.83 58.0 3.56e-01 72.9% 14.8%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.76 56.0 4.46e-01 78.0% 55.7%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 56.0 4.47e-01 78.0% 55.5%
4025349 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.75 59.0 4.51e-01 100.0% 38.5%
5067742 604.11.1.0 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like 0.73 55.0 5.16e-01 100.0% 67.1%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 63.0 4.83e-01 100.0% 72.3%
5062471 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.69 56.0 4.48e-01 86.4% 54.5%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 55.0 4.30e-01 84.7% 49.6%
3392569 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 62.0 4.78e-01 100.0% 67.2%
4025452 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 56.0 4.49e-01 89.8% 59.1%
3781291 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 54.0 4.53e-01 100.0% 52.0%
4662222 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 60.0 4.72e-01 100.0% 66.7%
3270487 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 60.0 4.83e-01 100.0% 69.1%
3935332 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 59.0 4.57e-01 100.0% 54.6%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 59.0 4.75e-01 100.0% 80.9%
4022379 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 56.0 4.08e-01 98.3% 36.0%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 57.0 4.55e-01 98.3% 67.8%
5026112 3457.1.1.0 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.64 45.0 3.06e-01 74.6% 50.9%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 56.0 4.44e-01 98.3% 56.7%
3254236 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 57.0 4.64e-01 100.0% 73.3%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 54.0 4.33e-01 100.0% 52.5%
4181293 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 55.0 4.47e-01 100.0% 69.1%
3600649 4106.1.1.0 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack 0.61 52.0 3.69e-01 96.6% 62.1%
3493963 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 50.0 4.39e-01 100.0% 68.0%
5014663 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.59 49.0 3.15e-01 100.0% 57.3%
3192973 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.35e-01 98.3% 58.8%
3605352 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 2.82e-01 94.9% 35.0%
4887257 206.1.1.73 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, APH 0.50 35.0 2.62e-01 78.0% 58.2%