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MH590603.1__AXH70436.1__SEA_DAREDEVIL_49__00049

Bact-Vir

MH590603.1__AXH70436.1__SEA_DAREDEVIL_49__00049

Identity

Accession:
MH590603 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.67 51.0 4.83e-01 80.0% 97.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.66 51.0 5.22e-01 100.0% 90.9%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 50.0 4.37e-01 100.0% 55.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 44.0 4.08e-01 78.6% 56.5%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 48.0 4.21e-01 100.0% 55.5%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 48.0 4.67e-01 88.6% 77.6%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 47.0 4.74e-01 84.3% 87.3%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 46.0 3.06e-01 84.3% 59.7%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.60 46.0 3.68e-01 91.4% 41.3%
5d77A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 43.0 4.16e-01 78.6% 95.1%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 51.0 3.40e-01 100.0% 50.0%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 40.0 3.19e-01 90.0% 33.8%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.70e-01 90.0% 93.7%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 47.0 3.62e-01 98.6% 87.6%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 48.0 3.24e-01 100.0% 86.0%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 4.46e-01 98.6% 86.3%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 49.0 4.45e-01 100.0% 86.9%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.57 47.0 3.70e-01 90.0% 92.9%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.62e-01 100.0% 57.6%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 40.0 3.59e-01 100.0% 50.9%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 47.0 4.36e-01 100.0% 92.6%
1x5fA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.60e-01 100.0% 49.2%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.90e-01 100.0% 86.9%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.45e-01 100.0% 80.0%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.11e-01 100.0% 73.3%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.68e-01 100.0% 59.2%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 42.0 3.87e-01 100.0% 65.9%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 44.0 3.45e-01 98.6% 94.9%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.82e-01 100.0% 64.3%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.98e-01 100.0% 69.2%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 47.0 4.15e-01 100.0% 74.0%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 42.0 3.93e-01 94.3% 92.6%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 39.0 2.62e-01 81.4% 100.0%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 4.26e-01 100.0% 80.2%
2dleA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 4.32e-01 100.0% 81.4%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.51 44.0 3.51e-01 100.0% 76.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 39.0 3.60e-01 97.1% 62.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 44.0 3.84e-01 100.0% 63.1%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.02e-01 100.0% 76.1%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 44.0 3.65e-01 100.0% 75.8%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.93e-01 100.0% 74.5%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.44e-01 100.0% 76.3%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.79e-01 98.6% 83.5%
3qt2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.89e-01 100.0% 71.4%
4gs7C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.99e-01 100.0% 71.4%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.78e-01 100.0% 67.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 54.0 5.34e-01 80.0% 84.0%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.69 50.0 3.98e-01 84.3% 37.5%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.68 50.0 3.96e-01 85.7% 37.9%
4979507 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.68 51.0 3.92e-01 84.3% 36.9%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 49.0 5.33e-01 81.4% 93.1%
3929359 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 52.0 4.50e-01 84.3% 78.0%
185296 862.1.1.4 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.66 51.0 3.72e-01 100.0% 30.2%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.66 44.0 2.96e-01 84.3% 16.7%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.65 48.0 4.03e-01 80.0% 100.0%
4059006 9.9.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.64 48.0 3.97e-01 80.0% 100.0%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 48.0 5.21e-01 81.4% 96.6%
3730441 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 51.0 3.32e-01 92.9% 20.3%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 48.0 5.23e-01 82.9% 98.3%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 48.0 5.14e-01 81.4% 95.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 48.0 5.18e-01 81.4% 98.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 48.0 4.68e-01 82.9% 76.0%
1937212 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.62 49.0 4.25e-01 100.0% 55.5%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 49.0 5.14e-01 84.3% 93.7%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 45.0 5.02e-01 80.0% 98.2%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 48.0 4.17e-01 84.3% 54.6%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 48.0 4.21e-01 88.6% 56.2%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 47.0 4.74e-01 82.9% 81.4%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 48.0 4.17e-01 84.3% 56.7%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 48.0 4.17e-01 90.0% 55.6%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 47.0 4.14e-01 84.3% 58.4%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 47.0 4.14e-01 88.6% 58.4%
3227513 3115.1.1.3 a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.59 46.0 4.02e-01 84.3% 56.2%
3598842 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.59 53.0 4.07e-01 98.6% 78.0%
3559814 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 4.75e-01 98.6% 78.9%
4870269 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 4.01e-01 87.1% 76.2%
3998039 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.68e-01 100.0% 38.8%
4527830 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.52e-01 100.0% 81.0%
None 0.58 51.0 2.99e-01 100.0% 13.8%
4960838 11.14.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.57 46.0 4.33e-01 100.0% 72.2%
3284335 2492.1.1.28 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Toxin-deaminase 0.57 41.0 3.45e-01 78.6% 83.1%
3203256 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 49.0 3.09e-01 100.0% 26.3%
3636893 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 51.0 4.51e-01 98.6% 76.0%
3196737 11.1.1.643 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 0.56 52.0 4.54e-01 100.0% 75.0%
3565481 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 50.0 4.37e-01 100.0% 76.2%
3734638 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.56 51.0 4.48e-01 100.0% 76.0%
3211800 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.47e-01 100.0% 74.4%
3223402 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.82e-01 100.0% 58.0%
3514371 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 40.0 2.98e-01 81.4% 27.4%
4965619 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.38e-01 95.7% 96.5%
3238729 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.89e-01 100.0% 76.9%
4152762 2492.1.1.20 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 0.55 40.0 3.07e-01 81.4% 30.5%
3217546 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 47.0 4.08e-01 100.0% 79.1%
3923858 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.95e-01 100.0% 80.0%
3831284 207.1.1.465 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3, LRR_4 0.55 47.0 2.90e-01 100.0% 22.2%
3481896 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 48.0 3.73e-01 100.0% 69.7%
3568886 2492.1.1.29 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.54 40.0 2.96e-01 85.7% 26.5%
3789334 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 48.0 4.20e-01 100.0% 80.0%
3608424 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 46.0 3.06e-01 100.0% 25.2%
3515281 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 44.0 3.93e-01 100.0% 75.2%
3640841 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 40.0 2.55e-01 88.6% 15.9%
3941935 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 43.0 3.77e-01 100.0% 60.9%
3513507 7508.1.1.1 a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 0.51 32.0 2.67e-01 71.4% 33.3%
3273357 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.50 44.0 3.91e-01 100.0% 80.0%
4934819 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 43.0 3.64e-01 100.0% 80.8%
3609926 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.50 44.0 3.63e-01 100.0% 63.1%