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MH595538.1__AXH70775.1__X__00034

Bact-Vir

MH595538.1__AXH70775.1__X__00034

Identity

Accession:
MH595538 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_BONAISHI

TaxID: 2283011

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-118
PDB
Domain cluster: rep: LC765218.1__BEG72465.1__RVBP21_0930__00093__D54-138
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.69 50.0 4.40e-01 94.7% 50.9%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.69 58.0 5.60e-01 94.7% 83.3%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.68 46.0 3.56e-01 82.7% 32.1%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 51.0 4.81e-01 89.3% 67.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.65 57.0 5.35e-01 98.7% 80.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 57.0 4.87e-01 100.0% 61.7%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.62 43.0 3.48e-01 84.0% 37.8%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.61 45.0 4.00e-01 78.7% 68.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.61 44.0 3.50e-01 89.3% 37.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 53.0 4.36e-01 100.0% 77.9%
3devA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 46.0 3.93e-01 82.7% 52.6%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 46.0 3.83e-01 86.7% 56.5%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 40.0 3.11e-01 70.7% 36.8%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 41.0 3.56e-01 77.3% 48.7%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 4.06e-01 82.7% 97.9%
2pfcA00 3.10.129.30 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain 0.55 46.0 3.63e-01 93.3% 60.0%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 3.53e-01 92.0% 59.8%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 49.0 3.64e-01 100.0% 70.6%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.54 40.0 3.19e-01 77.3% 43.6%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 39.0 3.47e-01 94.7% 53.2%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.53e-01 89.3% 58.9%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 48.0 3.19e-01 100.0% 47.0%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 41.0 3.11e-01 81.3% 84.3%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 41.0 3.40e-01 85.3% 87.9%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.87e-01 93.3% 60.2%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.52 43.0 4.24e-01 88.0% 91.0%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 38.0 3.41e-01 77.3% 87.9%
5brqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 39.0 3.78e-01 77.3% 97.5%
2ze0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 38.0 3.80e-01 77.3% 97.5%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 39.0 2.94e-01 81.3% 91.1%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 41.0 3.13e-01 94.7% 36.7%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.46e-01 90.7% 59.2%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.42e-01 92.0% 58.0%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 41.0 3.16e-01 85.3% 44.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963078 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.68 60.0 5.72e-01 100.0% 83.5%
4176400 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.68 53.0 5.37e-01 90.7% 85.3%
3198214 274.1.1.48 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 0.68 55.0 5.66e-01 88.0% 95.7%
3313558 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.67 54.0 4.81e-01 89.3% 82.7%
5053654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 46.0 3.96e-01 86.7% 45.0%
4973639 210.2.1.3 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.66 51.0 3.87e-01 82.7% 64.4%
3703112 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 51.0 4.38e-01 85.3% 52.5%
3601580 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 54.0 3.53e-01 92.0% 20.6%
5071962 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 4.11e-01 92.0% 44.1%
5053632 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 4.33e-01 96.0% 52.0%
3308699 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.65 54.0 4.75e-01 92.0% 83.6%
5051461 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 44.0 3.41e-01 90.7% 32.4%
3652660 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.63 52.0 3.67e-01 92.0% 64.1%
4679943 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.63 48.0 3.81e-01 96.0% 38.2%
4660860 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.62 34.0 2.30e-01 88.0% 14.5%
3279278 223.1.1.37 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N 0.61 49.0 4.38e-01 88.0% 61.9%
5052185 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 43.0 3.64e-01 85.3% 43.8%
5067842 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.60 48.0 3.91e-01 86.7% 55.0%
3526382 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 41.0 3.66e-01 76.0% 49.1%
4955365 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.59 47.0 3.91e-01 86.7% 57.8%
3699929 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 52.0 4.06e-01 100.0% 97.1%
4010890 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 47.0 3.78e-01 86.7% 64.8%
4945413 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.59 46.0 3.85e-01 86.7% 57.8%
3927846 109.4.1.1948 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.58 46.0 3.23e-01 88.0% 62.8%
3299711 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.58 48.0 3.99e-01 92.0% 63.7%
4025950 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 46.0 3.35e-01 86.7% 52.4%
5034546 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 45.0 4.05e-01 85.3% 73.3%
4980695 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 45.0 3.98e-01 85.3% 69.1%
4930498 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 45.0 4.11e-01 85.3% 73.0%
4974362 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 45.0 3.10e-01 85.3% 75.0%
3740580 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 48.0 3.71e-01 96.0% 44.6%
3272661 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.56 46.0 3.24e-01 90.7% 96.7%
3248340 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.55 50.0 3.56e-01 100.0% 34.2%
3201982 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 45.0 4.37e-01 89.3% 87.1%
3057485 71.1.1.10 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.55 46.0 3.69e-01 94.7% 49.4%
3542858 225.1.1.13 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90 0.54 47.0 3.34e-01 97.3% 59.1%
1873865 216.1.1.6 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UFC1 0.53 40.0 3.02e-01 78.7% 82.0%
3962256 295.1.1.32 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DDE_Tnp_1 0.53 44.0 3.59e-01 89.3% 55.6%
3973879 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.53 43.0 3.47e-01 92.0% 51.6%
4026940 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 37.0 2.97e-01 80.0% 94.5%
5002666 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 38.0 2.84e-01 81.3% 82.0%
4196609 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.51 42.0 3.59e-01 94.7% 56.7%