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MH595538.1__AXH70788.1__X__00047

Bact-Vir

MH595538.1__AXH70788.1__X__00047

Identity

Accession:
MH595538 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_BONAISHI

TaxID: 2283011

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 216-270
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.53 35.0 3.10e-01 100.0% 45.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.55 42.0 2.41e-01 92.7% 39.6%
3741065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 3.03e-01 70.9% 80.0%
D2 medium residues 20-121_172-192
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079578 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.52 30.0 3.47e-01 73.2% 77.8%
3873240 378.1.1.25 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N 0.51 46.0 4.00e-01 99.2% 92.4%
D3 medium residues 122-171_193-213
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.65 56.0 4.89e-01 94.4% 84.0%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.80e-01 100.0% 59.9%
1vclA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 3.19e-01 77.5% 94.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3516622 5.1.4.278 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, BING4CT 0.52 44.0 3.02e-01 100.0% 58.3%
4029417 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.85e-01 98.6% 85.4%