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MH595538.1__AXH70797.1__X__00056

Bact-Vir

MH595538.1__AXH70797.1__X__00056

Identity

Accession:
MH595538 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-112
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.72 57.0 5.89e-01 98.5% 93.4%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.71 65.0 5.45e-01 100.0% 65.7%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.71 56.0 5.70e-01 98.5% 90.6%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.68 58.0 5.28e-01 100.0% 73.9%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.67 59.0 5.10e-01 100.0% 70.2%
3r7tA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.67 53.0 4.85e-01 89.4% 94.5%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 57.0 5.28e-01 95.5% 75.6%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 51.0 4.66e-01 84.8% 70.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.66 59.0 5.52e-01 98.5% 87.7%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.65 36.0 4.24e-01 86.4% 80.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.65 41.0 3.74e-01 77.3% 48.3%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 52.0 4.10e-01 90.9% 98.0%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 50.0 4.10e-01 84.8% 50.8%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.63 52.0 4.26e-01 90.9% 81.0%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 50.0 3.94e-01 89.4% 45.6%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.61 46.0 3.79e-01 80.3% 45.4%
5mj6A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.61 44.0 2.88e-01 100.0% 15.7%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 42.0 4.26e-01 77.3% 71.6%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 45.0 3.71e-01 78.8% 71.7%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 48.0 4.05e-01 92.4% 58.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.60 37.0 4.23e-01 90.9% 83.7%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.60 50.0 4.34e-01 95.5% 94.3%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.59 51.0 3.93e-01 100.0% 58.9%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.78e-01 95.5% 93.0%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.58 48.0 3.96e-01 95.5% 64.8%
3hjlA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.57 45.0 4.21e-01 89.4% 87.1%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.57 47.0 3.97e-01 93.9% 79.5%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 46.0 4.18e-01 89.4% 69.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 40.0 3.86e-01 72.7% 76.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.56 50.0 4.58e-01 100.0% 82.6%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 44.0 3.94e-01 84.8% 89.6%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 40.0 3.78e-01 75.8% 63.3%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 39.0 4.07e-01 84.8% 80.0%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.55 43.0 3.54e-01 86.4% 62.1%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 3.86e-01 100.0% 62.3%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.55 34.0 3.22e-01 72.7% 51.2%
3lcrB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 3.09e-01 97.0% 51.8%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 40.0 3.29e-01 87.9% 39.3%
2vy3A01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.54 44.0 3.15e-01 98.5% 27.5%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 38.0 3.74e-01 95.5% 70.0%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 44.0 4.13e-01 90.9% 92.6%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.53 45.0 3.32e-01 98.5% 92.2%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.53 41.0 2.78e-01 90.9% 82.6%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 47.0 3.41e-01 100.0% 39.0%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 43.0 4.26e-01 92.4% 86.1%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.52 43.0 3.87e-01 98.5% 89.0%
2oc5A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 39.0 2.85e-01 86.4% 28.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 3.80e-01 81.8% 78.8%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.74e-01 95.5% 80.6%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 42.0 3.68e-01 93.9% 90.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944936 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 59.0 5.80e-01 95.5% 80.0%
184733 3640.1.1.1 alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.71 65.0 5.01e-01 100.0% 50.7%
3933574 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.71 60.0 4.69e-01 100.0% 50.6%
60156 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.70 61.0 4.27e-01 100.0% 30.8%
4060070 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.70 61.0 5.80e-01 100.0% 88.7%
4943037 101.1.17.1 alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.70 58.0 5.64e-01 100.0% 82.7%
3369476 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.70 58.0 4.01e-01 100.0% 27.6%
3945879 101.38.1.4 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 0.69 60.0 5.13e-01 100.0% 63.6%
3625478 4207.1.1.56 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › OPA1_C 0.69 59.0 4.82e-01 100.0% 50.8%
3169408 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.68 58.0 5.75e-01 100.0% 90.0%
3989754 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.68 60.0 5.96e-01 100.0% 94.3%
1088836 101.38.1.0 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep 0.68 58.0 4.84e-01 100.0% 55.7%
3738901 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.67 58.0 4.10e-01 100.0% 34.4%
143247 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.66 59.0 5.47e-01 98.5% 85.4%
5040600 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.66 54.0 4.07e-01 90.9% 36.4%
2723200 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 54.0 4.68e-01 97.0% 75.0%
4032837 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.63 49.0 3.64e-01 86.4% 38.4%
4984872 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.63 50.0 3.82e-01 95.5% 35.1%
3374304 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.63 44.0 4.17e-01 74.2% 87.5%
4979296 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.63 50.0 3.80e-01 95.5% 34.9%
4983306 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.62 49.0 3.76e-01 97.0% 34.9%
5033493 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.62 48.0 3.69e-01 90.9% 34.3%
3450546 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 50.0 4.22e-01 95.5% 100.0%
4505178 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.60 51.0 4.55e-01 95.5% 74.7%
5022337 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 44.0 3.95e-01 80.3% 61.0%
3492885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.76e-01 100.0% 88.7%
3199446 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 44.0 3.86e-01 78.8% 70.0%
4172555 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.59 48.0 4.25e-01 95.5% 96.2%
3589407 592.2.1.5 alpha arrays › PWI domain-like › YugE-like › YugE-like › Phage_holin_4_2 0.58 51.0 4.35e-01 100.0% 85.5%
3330988 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.58 49.0 4.12e-01 100.0% 98.4%
4997779 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 44.0 3.44e-01 81.8% 84.3%
4032972 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.58 50.0 3.65e-01 100.0% 66.8%
5081529 3931.1.1.0 alpha bundles › MtlR-like › MtlR-like › MtlR-like 0.58 43.0 3.44e-01 80.3% 91.1%
4946914 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.58 45.0 3.62e-01 89.4% 48.3%
5007608 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.57 43.0 3.59e-01 89.4% 47.0%
5023341 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.56 40.0 3.96e-01 77.3% 71.4%
5060111 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.55 43.0 2.75e-01 89.4% 40.0%
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.55 47.0 4.48e-01 97.0% 88.7%
55657 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.54 44.0 4.08e-01 93.9% 94.4%
3251736 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.54 43.0 3.26e-01 100.0% 32.1%
3471120 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 39.0 3.98e-01 77.3% 78.5%
5007466 159.1.2.2 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG 0.54 44.0 4.02e-01 90.9% 73.3%
3508961 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 39.0 3.54e-01 100.0% 55.0%
4990077 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 44.0 3.32e-01 100.0% 77.4%
3997228 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.52 41.0 3.39e-01 92.4% 78.6%
4227989 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.52 41.0 3.84e-01 95.5% 69.7%
4937573 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 38.0 3.05e-01 80.3% 40.0%
3183105 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.50 42.0 2.99e-01 100.0% 33.6%