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MH595538.1__AXH70881.1__X__00140

Bact-Vir

MH595538.1__AXH70881.1__X__00140

Identity

Accession:
MH595538 ↗
Kingdom:
phage

Quality

56.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_BONAISHI

TaxID: 2283011

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-92
PDB
D2 high residues 124-219
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.80 70.0 6.77e-01 92.7% 84.0%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 28.0 3.86e-01 90.6% 97.7%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.58 47.0 3.99e-01 88.5% 66.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 26.0 3.46e-01 83.3% 79.6%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.91e-01 82.3% 49.7%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.75e-01 81.2% 60.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.79 67.0 6.29e-01 89.6% 86.1%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 30.0 3.88e-01 70.8% 98.0%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 29.0 3.79e-01 70.8% 98.0%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 41.0 2.54e-01 81.2% 25.1%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 28.0 2.74e-01 71.9% 43.7%
1487666 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 26.0 3.13e-01 81.2% 76.4%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 30.0 3.39e-01 77.1% 75.3%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.32e-01 80.2% 77.1%
3613292 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 36.0 2.49e-01 76.0% 52.1%
1687688 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.50 42.0 2.84e-01 100.0% 94.2%