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MH595538.1__AXH71000.1__X__00259

Bact-Vir

MH595538.1__AXH71000.1__X__00259

Identity

Accession:
MH595538 ↗
Kingdom:
phage

Quality

65.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_BONAISHI

TaxID: 2283011

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-131
PDB
D2 high residues 142-347
PDB
Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 48.5 1.70e-12 60.7% 94.7%
D3 high residues 353-414
PDB
Domain cluster: rep: OL676770.1__UIW11044.1__VP5_032__00031__D294-352
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 48.0 5.19e-01 74.2% 84.6%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 48.0 4.78e-01 74.2% 73.4%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 45.0 4.61e-01 74.2% 73.3%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 38.0 3.98e-01 72.6% 63.6%
2lklA01 1.10.1900.40 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 0.64 45.0 4.34e-01 74.2% 95.8%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 44.0 4.16e-01 75.8% 61.0%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.63 42.0 3.86e-01 72.6% 53.1%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.62 50.0 3.67e-01 95.2% 81.0%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 49.0 4.32e-01 90.3% 64.9%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 37.0 2.43e-01 74.2% 97.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080185 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 50.0 4.64e-01 74.2% 60.0%
4147304 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.69 48.0 4.89e-01 74.2% 78.3%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.68 48.0 4.78e-01 74.2% 74.6%
3801470 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.67 48.0 5.16e-01 79.0% 94.0%
4665947 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.67 47.0 4.82e-01 74.2% 81.0%
3794964 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 48.0 4.91e-01 80.6% 78.3%
3623078 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 47.0 5.02e-01 79.0% 92.0%
3711037 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 50.0 4.83e-01 83.9% 75.7%
4514726 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.65 45.0 4.48e-01 74.2% 83.1%
4928778 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.61 50.0 5.07e-01 95.2% 100.0%
3802003 148.1.3.219 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › mTERF 0.60 51.0 3.89e-01 100.0% 47.9%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.57 48.0 3.91e-01 98.4% 56.0%
3783811 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 40.0 3.66e-01 75.8% 87.1%
3286507 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.56 47.0 3.89e-01 98.4% 60.0%
3587609 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.54 30.0 3.33e-01 75.8% 68.0%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.55e-01 90.3% 23.6%
3965868 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.53 36.0 3.74e-01 77.4% 75.0%