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MH598800.1__AXH71622.1__P031_gp01__00001
Bact-VirMH598800.1__AXH71622.1__P031_gp01__00001
Identity
- Accession:
- MH598800 ↗
- Kingdom:
- phage
Quality
94.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Pelagivirus›
Pelagibacter_phage_HTVC031P
TaxID: 2283017
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-83
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5gxdA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.65 | 56.0 | 3.45e-01 | 100.0% | 51.2% |
| 4ljiB00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.62 | 49.0 | 4.08e-01 | 87.5% | 94.7% |
| 3gqwB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.62 | 53.0 | 3.33e-01 | 100.0% | 50.3% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 3.89e-01 | 76.4% | 77.7% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 51.0 | 4.14e-01 | 100.0% | 81.1% |
| 4lmyA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.59 | 36.0 | 3.97e-01 | 80.6% | 79.6% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 4.10e-01 | 100.0% | 76.4% |
| 3ar4A04 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.59 | 50.0 | 3.55e-01 | 100.0% | 41.8% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 49.0 | 4.08e-01 | 100.0% | 78.4% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 49.0 | 4.23e-01 | 100.0% | 85.0% |
| 4rayA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.56 | 33.0 | 3.71e-01 | 77.8% | 82.0% |
| 3gzbA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 49.0 | 3.86e-01 | 100.0% | 70.1% |
| 4lmiB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 49.0 | 4.00e-01 | 100.0% | 66.2% |
| 3eyyA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.55 | 34.0 | 3.77e-01 | 75.0% | 86.3% |
| 2fe3A02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.55 | 33.0 | 3.63e-01 | 83.3% | 75.4% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 3.80e-01 | 100.0% | 79.4% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 42.0 | 2.86e-01 | 90.3% | 31.9% |
| 8i3jA01 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.53 | 39.0 | 2.76e-01 | 80.6% | 95.2% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 41.0 | 3.42e-01 | 90.3% | 69.5% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 40.0 | 2.66e-01 | 87.5% | 95.7% |
| 1vk1A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.52 | 34.0 | 3.08e-01 | 100.0% | 47.1% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 39.0 | 2.89e-01 | 87.5% | 53.6% |
| 3purA02 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.51 | 40.0 | 2.68e-01 | 87.5% | 58.9% |
| 3pvsA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 38.0 | 3.81e-01 | 100.0% | 77.6% |
| 2b9sA02 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.51 | 35.0 | 3.35e-01 | 91.7% | 59.8% |
| 2ebnA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 41.0 | 2.75e-01 | 88.9% | 86.7% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.50 | 41.0 | 3.42e-01 | 95.8% | 83.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5023652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 46.0 | 3.47e-01 | 75.0% | 65.9% |
| 3692872 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.65 | 56.0 | 3.38e-01 | 94.4% | 50.5% |
| 4077203 | 107.1.1.10 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C550 | 0.64 | 50.0 | 4.16e-01 | 87.5% | 90.4% |
| 5067568 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.61 | 52.0 | 3.47e-01 | 100.0% | 74.3% |
| 3579405 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.61 | 53.0 | 3.63e-01 | 100.0% | 43.8% |
| 3269066 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 48.0 | 4.06e-01 | 88.9% | 97.6% |
| 3226411 | 243.1.1.82 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 | 0.60 | 52.0 | 4.16e-01 | 100.0% | 84.7% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.60 | 42.0 | 3.34e-01 | 76.4% | 66.9% |
| 3964016 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 39.0 | 3.04e-01 | 84.7% | 31.0% |
| 2605239 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.59 | 52.0 | 4.40e-01 | 100.0% | 83.3% |
| 4083434 | 5069.1.1.53 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › UPF0182 | 0.58 | 42.0 | 3.19e-01 | 77.8% | 55.0% |
| 4133361 | 221.2.1.2 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › mIF3 | 0.58 | 47.0 | 4.33e-01 | 100.0% | 67.3% |
| 3221045 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.58 | 50.0 | 4.14e-01 | 100.0% | 78.5% |
| 4960763 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.56 | 49.0 | 3.60e-01 | 100.0% | 43.4% |
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.56 | 41.0 | 3.77e-01 | 80.6% | 91.0% |
| 5050695 | 3352.1.1.15 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › GT87 | 0.56 | 47.0 | 3.05e-01 | 100.0% | 64.7% |
| 4344731 | 221.2.1.2 ↗ | a+b two layers › beta-Grasp › IF3-N › IF3-N › mIF3 | 0.56 | 46.0 | 4.33e-01 | 100.0% | 74.4% |
| 3939667 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.55 | 49.0 | 3.22e-01 | 100.0% | 31.1% |
| 3744352 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.55 | 41.0 | 2.76e-01 | 80.6% | 32.4% |
| 3961299 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.54 | 46.0 | 3.61e-01 | 100.0% | 67.6% |
| 5011282 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.54 | 39.0 | 2.54e-01 | 77.8% | 58.1% |
| 5015560 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.54 | 43.0 | 3.61e-01 | 87.5% | 66.4% |
| 3437890 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.67e-01 | 80.6% | 71.6% |
| 3969379 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 43.0 | 3.55e-01 | 100.0% | 74.7% |
| 5072986 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.52 | 41.0 | 3.42e-01 | 87.5% | 63.1% |
| 4948342 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.52 | 40.0 | 3.12e-01 | 87.5% | 45.6% |
| 3690104 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.52 | 44.0 | 3.50e-01 | 95.8% | 86.7% |
| 3925978 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.52 | 42.0 | 3.33e-01 | 94.4% | 76.4% |
| 3255589 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 38.0 | 2.49e-01 | 77.8% | 28.3% |