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MH598800.1__AXH71660.1__P031_gp39__00039

Bact-Vir

MH598800.1__AXH71660.1__P031_gp39__00039

Identity

Accession:
MH598800 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagivirus› Pelagibacter_phage_HTVC031P

TaxID: 2283017

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 115-292
PDB
Domain cluster: rep: NC_001902__NP_046981.1__psiM2p27__00027__D58-215
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 29.0 3.73e-01 100.0% 81.6%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 30.0 4.09e-01 93.3% 100.0%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 31.0 4.05e-01 93.8% 98.0%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.84e-01 97.8% 100.0%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.57e-01 93.3% 83.3%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 31.0 3.52e-01 86.5% 72.9%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 4.25e-01 84.8% 91.6%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.53 40.0 3.16e-01 87.1% 39.0%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 31.0 3.91e-01 93.3% 100.0%
2lrgA00 2.60.60.60 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.52 29.0 3.41e-01 86.5% 75.4%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 4.34e-01 85.4% 97.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 4.49e-01 100.0% 99.4%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.66e-01 92.7% 93.4%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 36.0 4.07e-01 73.6% 96.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4212121 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 36.0 4.27e-01 70.8% 74.0%
4970282 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 30.0 4.03e-01 98.9% 97.8%
1250267 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.57 39.0 4.54e-01 84.3% 98.4%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.56 34.0 3.19e-01 84.8% 49.3%
3817452 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 36.0 4.25e-01 80.3% 95.0%
4927194 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 34.0 4.25e-01 92.7% 99.1%
3959737 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 39.0 4.36e-01 86.0% 91.4%
4959363 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 30.0 3.85e-01 92.1% 92.0%
4560358 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.55 40.0 4.50e-01 80.9% 95.7%
5058553 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 4.01e-01 95.5% 99.0%
2775597 11.1.1.238 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG1 0.53 31.0 3.87e-01 94.4% 97.0%
4950854 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 27.0 3.56e-01 87.6% 95.6%
3259125 11.1.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.51 31.0 3.77e-01 94.4% 94.5%
5015033 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 30.0 3.58e-01 93.3% 87.8%
4013403 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.51 41.0 4.12e-01 87.1% 83.3%
3928231 11.1.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.50 29.0 3.69e-01 93.3% 96.2%
4975805 2499.1.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.50 39.0 2.81e-01 91.6% 28.2%
3724413 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 30.0 3.68e-01 92.7% 92.2%
D2 medium residues 10-57
PDB
Domain cluster: rep: OR515479.1__WNL63470.1__X__00194__D454-499
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02839.20 best CBM_5_12 33.5 4.80e-08 77.1% 61.4%
D3 medium residues 66-109
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pqmA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.57 42.0 3.76e-01 79.5% 74.6%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 2.83e-01 70.5% 51.9%
4j80A03 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.55 40.0 3.15e-01 79.5% 47.5%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 36.0 2.58e-01 70.5% 40.1%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.54 41.0 2.70e-01 90.9% 35.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416001 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 38.0 3.98e-01 97.7% 65.0%
3882088 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.55 39.0 3.82e-01 100.0% 72.0%
5018887 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.53 40.0 2.95e-01 97.7% 31.2%
3583168 101.1.2.490 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.53 41.0 3.20e-01 90.9% 42.7%
3218757 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 33.0 3.26e-01 81.8% 52.0%
3218325 389.1.1.1 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.52 34.0 3.27e-01 100.0% 54.5%
4949459 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 34.0 3.05e-01 72.7% 95.0%
3867479 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 39.0 3.37e-01 100.0% 50.7%