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MH598804.1__AXH71409.1__P105_gp06__00006

Bact-Vir

MH598804.1__AXH71409.1__P105_gp06__00006

Identity

Accession:
MH598804 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pelagivirus› Pelagibacter_phage_HTVC105P

TaxID: 2283018

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 39.0 2.93e-01 100.0% 25.5%
5k0uB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 2.97e-01 91.7% 49.4%
7ze1A01 2.60.40.1520 Mainly Beta › Sandwich › Immunoglobulin-like › Hemocyanin, C-terminal domain 0.58 39.0 2.59e-01 70.8% 17.9%
2h7aA01 3.10.510.20 Alpha Beta › Roll › NE1680-like fold › YcgL domain 0.53 37.0 3.25e-01 75.0% 64.5%
4fzqA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.52 42.0 3.72e-01 97.9% 73.4%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 41.0 2.46e-01 100.0% 43.0%
4nehA05 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.52 35.0 2.48e-01 70.8% 65.7%
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 33.0 2.52e-01 87.5% 26.0%
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.85e-01 70.8% 34.0%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 39.0 2.84e-01 89.6% 29.2%
3d7jA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.50 37.0 2.90e-01 87.5% 71.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058007 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.63 38.0 3.10e-01 85.4% 29.5%
4014561 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.63 45.0 3.45e-01 77.1% 35.7%
5071836 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.61 37.0 3.06e-01 85.4% 31.1%
4027165 11.1.1.1340 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7629 0.61 45.0 3.65e-01 83.3% 58.0%
5068820 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.77e-01 81.2% 90.7%
3945348 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.57 44.0 3.40e-01 100.0% 39.0%
3687547 11.1.1.150 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet 0.57 39.0 3.50e-01 83.3% 45.3%
4952838 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 38.0 2.39e-01 70.8% 71.0%
4579299 11.1.1.150 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet 0.53 37.0 2.99e-01 77.1% 35.0%
4019547 319.1.1.8 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.53 39.0 3.15e-01 89.6% 73.9%
3483174 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.52 38.0 2.32e-01 91.7% 84.2%
2983138 10.2.1.88 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat 0.52 40.0 2.70e-01 93.8% 49.6%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 2.88e-01 79.2% 68.3%
3652419 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 41.0 3.14e-01 91.7% 36.7%
4024695 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.51 41.0 2.89e-01 93.8% 27.5%
162283 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 34.0 2.69e-01 70.8% 27.6%
4013122 59.1.1.6 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIIC_sub6 0.51 35.0 2.87e-01 70.8% 40.0%
4930176 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 34.0 2.21e-01 70.8% 71.0%
3871348 4004.1.1.2 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › AGK_C 0.51 36.0 2.49e-01 79.2% 91.9%
4313119 327.13.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.51 47.0 3.26e-01 100.0% 39.6%
3682431 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 35.0 3.16e-01 75.0% 53.4%
3838651 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.50 41.0 2.95e-01 93.8% 30.0%