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MH606185.1__AXH71291.1__BSP38_249__00249

Bact-Vir

MH606185.1__AXH71291.1__BSP38_249__00249

Identity

Accession:
MH606185 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-90
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 40.0 3.38e-01 100.0% 30.4%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 39.0 3.34e-01 100.0% 33.0%
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.67 57.0 4.90e-01 98.3% 64.6%
2dm9A00 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.63 53.0 4.34e-01 100.0% 52.5%
3m1gA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 54.0 4.33e-01 98.3% 65.3%
6vu9A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 54.0 3.53e-01 100.0% 26.6%
3d6iA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 4.35e-01 100.0% 65.5%
2isbA00 3.20.130.10 Alpha Beta › Alpha-Beta Barrel › fumarase › Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain 0.61 46.0 3.35e-01 86.2% 84.2%
1zynA00 3.40.30.80 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.61 52.0 3.67e-01 100.0% 69.4%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 47.0 3.42e-01 91.4% 81.5%
3qdnA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 4.26e-01 100.0% 64.6%
5ze4A01 3.50.30.80 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like 0.59 48.0 3.63e-01 100.0% 73.6%
2yvtA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 48.0 3.22e-01 98.3% 99.2%
1vm6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 49.0 4.40e-01 100.0% 75.9%
3rqzC00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 48.0 3.21e-01 100.0% 99.2%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 47.0 3.13e-01 98.3% 84.5%
3kosA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 45.0 3.81e-01 98.3% 52.4%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 47.0 4.22e-01 100.0% 77.6%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.46e-01 100.0% 43.9%
2pe3D01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 42.0 2.96e-01 100.0% 63.3%
1a31A02 2.170.11.10 Mainly Beta › Beta Complex › DNA Topoisomerase I; domain 2 › DNA Topoisomerase I, domain 2 0.53 42.0 3.53e-01 100.0% 48.6%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.52 43.0 3.06e-01 96.6% 54.2%
4a5pB01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.52 42.0 3.45e-01 98.3% 48.0%
4nxiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.13e-01 100.0% 78.8%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 39.0 3.17e-01 84.5% 51.6%
4f0bA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.56e-01 96.6% 71.3%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 38.0 2.40e-01 79.3% 80.9%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 43.0 3.75e-01 98.3% 91.8%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.05e-01 89.7% 73.0%
3ho7A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 42.0 3.48e-01 100.0% 49.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3176422 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.72 63.0 4.22e-01 100.0% 42.6%
4282818 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.70 61.0 4.75e-01 100.0% 44.6%
3639426 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 41.0 2.35e-01 100.0% 6.7%
4191373 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.70 54.0 4.50e-01 100.0% 47.6%
4994471 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.68 54.0 4.66e-01 100.0% 54.7%
4080089 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.67 58.0 4.54e-01 100.0% 47.7%
4560058 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.67 53.0 4.31e-01 100.0% 45.2%
4947957 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.66 57.0 3.58e-01 100.0% 20.6%
3702525 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 57.0 4.23e-01 100.0% 38.1%
4526172 3464.1.1.1 extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › vATP-synt_E 0.66 55.0 3.92e-01 100.0% 30.3%
3760846 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.65 56.0 3.92e-01 100.0% 54.5%
3182751 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 3.83e-01 100.0% 52.1%
5069284 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.65 56.0 3.53e-01 100.0% 21.9%
3619138 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.65 55.0 4.00e-01 100.0% 47.4%
5049458 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.64 56.0 3.66e-01 100.0% 25.8%
4097188 298.4.1.2 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.64 52.0 4.31e-01 100.0% 49.1%
5023053 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 54.0 3.85e-01 100.0% 31.1%
4261563 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.64 55.0 4.36e-01 100.0% 51.2%
3981522 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 51.0 4.19e-01 100.0% 48.2%
4025888 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 53.0 4.72e-01 100.0% 83.3%
4009572 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 52.0 4.62e-01 100.0% 62.2%
4204829 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.63 53.0 3.82e-01 100.0% 30.5%
4028204 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 53.0 4.87e-01 100.0% 71.2%
4202847 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.63 53.0 3.99e-01 98.3% 38.0%
3273735 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.62 53.0 3.68e-01 100.0% 38.6%
4481707 298.4.1.2 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.62 54.0 4.36e-01 100.0% 51.3%
4052619 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.62 52.0 3.69e-01 100.0% 29.5%
4021437 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 54.0 3.66e-01 100.0% 40.9%
4038524 298.4.1.2 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.62 53.0 4.27e-01 100.0% 50.0%
3639672 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.62 52.0 3.54e-01 100.0% 36.7%
4933257 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.62 53.0 3.35e-01 100.0% 20.3%
4528694 298.4.1.2 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH 0.62 52.0 4.14e-01 100.0% 46.9%
2784294 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 52.0 4.96e-01 100.0% 91.5%
3971920 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.61 52.0 3.70e-01 100.0% 32.4%
3173824 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.61 52.0 3.58e-01 100.0% 38.6%
4118447 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.60 50.0 3.45e-01 100.0% 35.3%
None 0.59 49.0 3.96e-01 100.0% 75.4%
4933501 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.59 48.0 3.68e-01 94.8% 50.3%
3716312 2011.1.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 0.59 49.0 3.06e-01 98.3% 46.2%
4980231 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 50.0 4.34e-01 96.6% 73.3%
3391316 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 50.0 4.20e-01 100.0% 63.8%
4984416 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.58 48.0 4.04e-01 100.0% 58.2%
3727816 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 49.0 4.19e-01 100.0% 68.0%
4180375 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.58 42.0 3.75e-01 81.0% 73.3%
3532460 2485.1.1.117 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TXNDC16_3rd 0.58 48.0 4.11e-01 98.3% 67.0%
4879115 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 48.0 4.04e-01 100.0% 56.4%
4412841 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.57 49.0 3.82e-01 100.0% 43.7%
4666962 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.57 47.0 3.94e-01 100.0% 84.3%
3929669 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 48.0 2.87e-01 96.6% 48.2%
4025705 2485.1.1.43 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.57 48.0 3.97e-01 100.0% 62.6%
5011378 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 46.0 4.40e-01 98.3% 77.1%
5052327 301.1.1.1 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae 0.56 44.0 3.75e-01 87.9% 63.0%
None 0.56 46.0 3.56e-01 100.0% 63.4%
5074365 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.56 47.0 3.57e-01 100.0% 58.7%
4997788 2485.1.1.166 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › YoaP 0.56 47.0 4.05e-01 96.6% 67.4%
None 0.56 45.0 3.57e-01 100.0% 64.8%
3727764 3009.1.1.1 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.55 46.0 3.27e-01 100.0% 93.3%
4989070 298.2.1.1 a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.55 47.0 3.69e-01 100.0% 45.9%
4016508 2485.2.1.0 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain 0.55 45.0 3.89e-01 100.0% 65.7%
3838730 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.55 47.0 3.41e-01 100.0% 36.0%
4952057 298.2.1.1 a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.55 47.0 3.49e-01 100.0% 38.1%
2722070 301.13.1.3 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C 0.55 39.0 3.35e-01 79.3% 99.0%
2983383 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 44.0 3.99e-01 98.3% 70.2%
4212654 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.53 42.0 3.89e-01 91.4% 81.2%
4927503 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.53 44.0 3.44e-01 100.0% 56.4%
3385658 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.53 43.0 3.24e-01 100.0% 37.1%
5055723 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.52 39.0 3.16e-01 81.0% 45.8%
3495473 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.52 43.0 3.23e-01 98.3% 65.9%
3686779 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 39.0 2.72e-01 94.8% 21.7%
1197393 2485.1.1.13 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N 0.50 40.0 3.56e-01 98.3% 78.8%