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MH629685.1__AXN58410.1__X__00144
Bact-VirMH629685.1__AXN58410.1__X__00144
Identity
- Accession:
- MH629685 ↗
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Makelovirus›
Synechococcus_virus_S-PRM1
TaxID: 2100130
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 244-334
Domain cluster:
rep: NC_013021.1__YP_003084158.1__PSS2_gp014__00014__D65-154
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1am7A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 62.0 | 5.09e-01 | 100.0% | 59.1% |
| 7xnzA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.64 | 46.0 | 4.05e-01 | 74.7% | 61.2% |
| 4cooA03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.63 | 45.0 | 3.91e-01 | 74.7% | 50.4% |
| 7zhgO01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 40.0 | 4.52e-01 | 97.8% | 89.4% |
| 2vqeM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 40.0 | 4.48e-01 | 97.8% | 84.5% |
| 8d8lM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 38.0 | 3.99e-01 | 96.7% | 74.1% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.51 | 41.0 | 3.48e-01 | 90.1% | 81.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995397 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.62 | 40.0 | 4.25e-01 | 96.7% | 75.0% |
| 4374930 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.62 | 33.0 | 4.18e-01 | 90.1% | 94.0% |
| 3409450 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.61 | 44.0 | 3.74e-01 | 74.7% | 47.6% |
| 2123548 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.61 | 40.0 | 3.72e-01 | 96.7% | 53.1% |
| 4956662 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.59 | 39.0 | 3.58e-01 | 98.9% | 50.8% |
| 3783643 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.58 | 38.0 | 3.54e-01 | 96.7% | 50.8% |
| 2986054 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 38.0 | 3.94e-01 | 96.7% | 72.3% |
| 4937429 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 39.0 | 4.34e-01 | 96.7% | 90.0% |
| 4858910 | 102.2.1.2 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › Ribosomal_S13 | 0.57 | 38.0 | 3.51e-01 | 96.7% | 51.3% |
| 5039312 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.57 | 41.0 | 4.35e-01 | 97.8% | 85.0% |
| 4114962 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.56 | 39.0 | 4.02e-01 | 94.5% | 78.8% |
| 4931056 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.55 | 38.0 | 4.17e-01 | 98.9% | 86.7% |
| 5010628 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.55 | 38.0 | 3.97e-01 | 94.5% | 78.8% |
| 3793602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 3.02e-01 | 93.4% | 79.6% |
D2
medium
residues 335-436
Domain cluster:
rep: NC_015286.1__YP_004323852.1__Syn19_014__00014__D839-942