←Back to structures
MH629685.1__AXN58525.1__X__00029
Bact-VirMH629685.1__AXN58525.1__X__00029
Identity
- Accession:
- MH629685 ↗
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Makelovirus›
Synechococcus_virus_S-PRM1
TaxID: 2100130
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-208
Domain cluster:
rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00101__D224-326
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qcsA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 47.0 | 5.86e-01 | 100.0% | 95.1% |
| 2ae0X01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.69 | 50.0 | 4.52e-01 | 100.0% | 55.6% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.67 | 32.0 | 3.38e-01 | 100.0% | 49.2% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.65 | 33.0 | 3.30e-01 | 100.0% | 45.3% |
| 1pjqB05 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.64 | 32.0 | 3.38e-01 | 100.0% | 51.6% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 36.0 | 4.49e-01 | 100.0% | 97.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.60 | 36.0 | 4.43e-01 | 100.0% | 96.4% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 31.0 | 3.49e-01 | 100.0% | 65.4% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.58 | 43.0 | 4.29e-01 | 100.0% | 73.2% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 35.0 | 4.02e-01 | 100.0% | 82.7% |
| 3nutB02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 28.0 | 2.93e-01 | 100.0% | 50.8% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 39.0 | 4.18e-01 | 100.0% | 89.8% |
| 3i4tA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 31.0 | 3.02e-01 | 100.0% | 52.1% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 26.0 | 3.30e-01 | 100.0% | 83.3% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 22.0 | 2.83e-01 | 75.4% | 69.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255672 | 1.1.2.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF30270 | 0.78 | 56.0 | 5.39e-01 | 100.0% | 66.0% |
| 3258393 | 1.1.2.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF30270 | 0.74 | 55.0 | 5.49e-01 | 100.0% | 75.6% |
| 4121830 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 47.0 | 5.34e-01 | 100.0% | 91.0% |
| 3772228 | 1.1.2.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N | 0.69 | 48.0 | 4.90e-01 | 100.0% | 73.1% |
| 3186315 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 46.0 | 5.30e-01 | 100.0% | 92.0% |
| 3284382 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 48.0 | 5.35e-01 | 92.5% | 94.3% |
| 5070673 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 49.0 | 5.14e-01 | 94.0% | 85.0% |
| 4116299 | 1.1.2.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 | 0.66 | 44.0 | 5.15e-01 | 100.0% | 94.7% |
| 3665832 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.66 | 45.0 | 4.96e-01 | 100.0% | 85.5% |
| 4973372 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 49.0 | 5.05e-01 | 89.6% | 85.6% |
| 4996672 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 48.0 | 4.96e-01 | 88.8% | 84.8% |
| 4295923 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.62 | 29.0 | 3.51e-01 | 97.0% | 65.9% |
| 4953821 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.61 | 29.0 | 3.28e-01 | 99.3% | 57.0% |
| 4972012 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 48.0 | 4.96e-01 | 88.8% | 88.8% |
| 4929017 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 49.0 | 5.07e-01 | 92.5% | 91.2% |
| 5078146 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.61 | 49.0 | 4.99e-01 | 93.3% | 88.5% |
| 4928623 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.61 | 49.0 | 4.41e-01 | 92.5% | 61.6% |
| 3187087 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.60 | 47.0 | 4.85e-01 | 100.0% | 87.2% |
| 4375442 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 49.0 | 5.18e-01 | 89.6% | 98.3% |
| 5053004 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 46.0 | 4.84e-01 | 88.8% | 90.0% |
| 4963957 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 46.0 | 4.77e-01 | 89.6% | 88.0% |
| 5001457 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 47.0 | 4.84e-01 | 93.3% | 90.4% |
| 3643011 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.58 | 46.0 | 4.68e-01 | 100.0% | 87.7% |
| 5043030 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 31.0 | 3.38e-01 | 97.0% | 63.5% |
| 3591524 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 47.0 | 4.55e-01 | 92.5% | 97.3% |
| 3299989 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.53 | 32.0 | 3.23e-01 | 97.0% | 57.0% |
| 3481977 | 11.1.4.80 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 | 0.51 | 32.0 | 3.26e-01 | 97.8% | 63.1% |
| 3757469 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 27.0 | 3.26e-01 | 99.3% | 80.0% |