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MH631454.2__AXY85088.1__CPT_Sw2_186__00157

Bact-Vir

MH631454.2__AXY85088.1__CPT_Sw2_186__00157

Identity

Accession:
MH631454 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Salmonella_phage_Sw2

TaxID: 2316014

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-125
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.56 42.0 4.37e-01 100.0% 86.0%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 31.0 3.27e-01 94.0% 60.4%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.54 26.0 3.44e-01 91.5% 90.9%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.51 27.0 3.02e-01 98.3% 62.9%
4iuwA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.51 37.0 2.77e-01 76.9% 33.6%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 27.0 3.13e-01 99.1% 69.0%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 32.0 3.15e-01 82.9% 57.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077628 3103.1.1.0 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.68 48.0 5.43e-01 88.9% 100.0%
5039151 3103.1.1.0 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.64 50.0 5.37e-01 94.0% 99.0%
2574473 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 23.0 3.57e-01 79.5% 92.7%
4997648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 23.0 3.26e-01 75.2% 82.0%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 27.0 3.03e-01 98.3% 62.4%
4968841 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.87e-01 80.3% 55.4%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 27.0 2.99e-01 98.3% 62.2%
3516325 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 28.0 3.28e-01 76.9% 76.2%
4970648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.51 24.0 3.33e-01 98.3% 100.0%
D2 medium residues 130-259
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 34.0 3.19e-01 97.7% 43.3%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 47.0 3.69e-01 92.3% 80.3%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 38.0 3.24e-01 93.8% 42.4%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 32.0 3.91e-01 91.5% 90.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 32.0 3.10e-01 91.5% 51.9%
4o7oA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.51 45.0 3.69e-01 96.2% 69.9%
6ln0A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.51 25.0 2.71e-01 78.5% 51.0%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 26.0 3.33e-01 71.5% 87.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3353411 244.3.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › SufE 0.62 45.0 4.39e-01 98.5% 66.9%
4001717 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.62 36.0 4.38e-01 96.2% 91.3%
4029967 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.61 41.0 4.37e-01 88.5% 77.4%
4215142 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.60 45.0 4.61e-01 97.7% 82.4%
4675231 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.59 44.0 4.57e-01 97.7% 84.2%
4998595 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.58 43.0 3.30e-01 79.2% 97.8%
1870497 3271.1.1.1 ↗ alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 0.56 36.0 3.97e-01 94.6% 82.2%
3650360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 43.0 4.46e-01 93.8% 100.0%