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MH638294.1__AXG67778.1__X__00083

Bact-Vir

MH638294.1__AXG67778.1__X__00083

Identity

Accession:
MH638294 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-72
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.76 61.0 5.57e-01 94.2% 67.2%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.71 46.0 4.31e-01 82.7% 53.0%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.70 48.0 2.92e-01 71.2% 25.7%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.68 50.0 4.55e-01 78.8% 60.0%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 45.0 4.46e-01 86.5% 66.7%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 49.0 4.55e-01 78.8% 98.5%
3pf6A00 6.10.250.2290 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 43.0 4.18e-01 82.7% 58.3%
3r7aB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.65 55.0 3.64e-01 98.1% 50.4%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 48.0 4.65e-01 98.1% 70.0%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 48.0 3.17e-01 88.5% 21.0%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 53.0 5.03e-01 100.0% 80.6%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 40.0 4.27e-01 90.4% 87.5%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.61 48.0 3.95e-01 90.4% 46.2%
1oizA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.61 45.0 4.04e-01 100.0% 56.9%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.44e-01 86.5% 78.8%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 39.0 3.67e-01 71.2% 52.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.83e-01 73.1% 62.5%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.59 42.0 4.32e-01 100.0% 93.3%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.58 42.0 4.26e-01 94.2% 78.8%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 51.0 3.52e-01 100.0% 41.0%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.57 43.0 3.81e-01 98.1% 55.8%
3nkqA03 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.56 48.0 2.87e-01 96.2% 36.7%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.55 39.0 4.08e-01 75.0% 79.2%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 42.0 3.79e-01 100.0% 59.5%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 35.0 3.46e-01 82.7% 58.3%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 43.0 4.02e-01 94.2% 100.0%
1jb0K00 1.20.860.20 Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre 0.54 39.0 4.06e-01 84.6% 91.3%
3gaeA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 43.0 2.83e-01 90.4% 38.7%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 45.0 3.94e-01 100.0% 75.9%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 37.0 3.40e-01 80.8% 57.5%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.50 43.0 3.20e-01 100.0% 60.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490105 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.80 63.0 5.66e-01 86.5% 62.9%
3426400 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.79 62.0 6.07e-01 82.7% 78.2%
3366093 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.79 62.0 5.95e-01 84.6% 73.3%
4003225 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.77 58.0 5.70e-01 80.8% 76.4%
3301615 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.76 61.0 5.67e-01 86.5% 69.2%
3534900 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.76 58.0 5.27e-01 82.7% 61.4%
3347020 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 58.0 5.73e-01 98.1% 92.7%
5069732 545.1.2.0 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.67 52.0 4.46e-01 88.5% 53.8%
5052392 102.1.3.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.66 56.0 4.42e-01 100.0% 56.5%
3816176 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.66 52.0 4.19e-01 92.3% 43.8%
4000709 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.65 51.0 4.66e-01 100.0% 64.3%
3438464 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.65 49.0 5.04e-01 90.4% 86.0%
3174911 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 46.0 4.27e-01 75.0% 98.5%
4982757 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.64 45.0 3.13e-01 75.0% 39.5%
3533067 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.63 47.0 4.28e-01 80.8% 60.0%
4446398 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 44.0 4.49e-01 84.6% 78.0%
3429113 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.18e-01 96.2% 52.9%
4261275 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 48.0 3.45e-01 96.2% 26.7%
3904779 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 43.0 3.40e-01 75.0% 96.4%
3729102 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.61 53.0 3.16e-01 100.0% 46.1%
3805362 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 48.0 3.44e-01 98.1% 26.3%
5012879 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 52.0 4.68e-01 98.1% 89.2%
3773845 4207.1.2.75 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Mis14 0.60 49.0 4.01e-01 90.4% 49.5%
4093318 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.59 51.0 4.23e-01 100.0% 54.7%
3836444 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.56 48.0 3.38e-01 98.1% 95.3%
3590163 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.55 48.0 3.16e-01 100.0% 44.6%
4449691 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.54 42.0 4.00e-01 84.6% 81.0%
3089539 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.54 47.0 2.97e-01 100.0% 80.4%
4315800 2004.1.1.72 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT 0.54 45.0 3.00e-01 96.2% 86.8%
4865215 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.54 37.0 3.71e-01 75.0% 70.4%
4304916 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.53 41.0 3.51e-01 94.2% 53.0%
4479551 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.51 46.0 3.82e-01 100.0% 57.8%
3715687 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 38.0 2.53e-01 88.5% 60.4%
D2 medium residues 79-109
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkeA00 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.83 66.0 4.10e-01 100.0% 16.4%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.79 61.0 5.28e-01 100.0% 54.5%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.72 55.0 4.07e-01 100.0% 31.9%
1sw2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 49.0 3.26e-01 93.5% 17.5%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 46.0 3.67e-01 100.0% 34.5%
6g6kC00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.63 46.0 3.66e-01 100.0% 35.2%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 45.0 3.83e-01 83.9% 46.3%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 46.0 2.85e-01 100.0% 35.5%
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.61 41.0 3.56e-01 96.8% 57.3%
8cuyA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 46.0 3.66e-01 90.3% 41.9%
2q9rA01 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.58 43.0 2.67e-01 87.1% 51.8%
3sdgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 41.0 3.86e-01 83.9% 59.5%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.56 42.0 2.69e-01 83.9% 15.1%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 38.0 3.37e-01 100.0% 52.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2714249 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 68.0 4.09e-01 93.5% 15.3%
3298760 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 69.0 6.97e-01 96.8% 100.0%
3392993 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 68.0 5.99e-01 100.0% 62.0%
3427240 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 67.0 6.60e-01 100.0% 91.4%
5046134 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 67.0 4.31e-01 100.0% 20.7%
5074964 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.82 65.0 4.54e-01 100.0% 27.2%
3165714 4076.3.1.10 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › HeH 0.81 66.0 6.44e-01 100.0% 85.7%
3326565 130.1.1.42 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7787 0.81 63.0 5.79e-01 100.0% 66.7%
3172901 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 63.0 6.22e-01 100.0% 85.7%
3208160 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.75 58.0 5.22e-01 100.0% 60.0%
3743065 3245.1.1.1 extended segments › Chaotic nuclear migration protein 67 › Chaotic nuclear migration protein 67 › Chaotic nuclear migration protein 67 › SID 0.74 63.0 4.31e-01 100.0% 27.0%
5048286 601.7.1.34 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.71 56.0 3.99e-01 100.0% 27.2%
4974358 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.70 54.0 3.93e-01 100.0% 29.5%
3507079 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.69 52.0 5.06e-01 100.0% 75.0%
4974395 601.7.1.34 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.67 53.0 3.87e-01 100.0% 31.0%
5078277 810.1.1.0 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.64 52.0 3.13e-01 100.0% 14.5%
3740124 101.1.17.19 alpha arrays › HTH › HTH › FF domain › DEK_C 0.64 47.0 3.99e-01 83.9% 50.9%
4975876 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.64 49.0 2.79e-01 90.3% 8.6%
3882320 101.1.17.19 alpha arrays › HTH › HTH › FF domain › DEK_C 0.63 46.0 3.86e-01 87.1% 50.0%
3390993 601.7.1.21 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 0.62 46.0 3.58e-01 100.0% 32.6%
3506035 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.60 45.0 3.20e-01 100.0% 31.5%
3384197 101.1.17.40 alpha arrays › HTH › HTH › FF domain › FF, FF_PRPF40A 0.58 42.0 3.04e-01 83.9% 27.3%
4874207 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.56 39.0 2.95e-01 90.3% 25.3%
4986010 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 2.63e-01 100.0% 53.2%