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MH645904.1__AXQ66774.1__X__00149

Bact-Vir

MH645904.1__AXQ66774.1__X__00149

Identity

Accession:
MH645904 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Pogseptimavirus› Vibrio_phage_vB_VpS_PG07

TaxID: 2301664

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-86
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.67e-01 93.4% 93.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.71 50.0 5.00e-01 90.8% 72.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.99e-01 100.0% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.18e-01 90.8% 82.4%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.36e-01 93.4% 92.1%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.45e-01 90.8% 98.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 5.00e-01 93.4% 91.7%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.46e-01 90.8% 56.2%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.27e-01 88.2% 97.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.94e-01 88.2% 84.5%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 54.0 4.87e-01 94.7% 75.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.90e-01 88.2% 84.7%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 52.0 4.27e-01 92.1% 98.6%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 48.0 3.92e-01 82.9% 100.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 5.15e-01 92.1% 95.7%
3s8kB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 52.0 4.03e-01 97.4% 96.2%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 50.0 4.01e-01 89.5% 54.1%
5dvhA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 52.0 3.95e-01 97.4% 95.1%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.71e-01 100.0% 81.2%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 52.0 3.84e-01 100.0% 49.1%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 52.0 4.12e-01 94.7% 60.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.71e-01 85.5% 93.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 51.0 4.05e-01 94.7% 57.6%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.59 52.0 3.91e-01 100.0% 83.0%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 50.0 4.32e-01 94.7% 69.7%
2xgjA05 2.40.30.300 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 46.0 3.93e-01 86.8% 76.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 51.0 4.73e-01 98.7% 93.7%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 51.0 3.98e-01 100.0% 48.8%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 45.0 3.85e-01 100.0% 52.8%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.10e-01 100.0% 56.0%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 47.0 3.83e-01 100.0% 55.1%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.94e-01 86.8% 82.5%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.62e-01 88.2% 91.6%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 41.0 2.65e-01 89.5% 25.1%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.46e-01 86.8% 77.8%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.28e-01 92.1% 98.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3328404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.83e-01 90.8% 98.1%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 54.0 5.55e-01 89.5% 82.4%
3368068 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.39e-01 92.1% 93.3%
3236073 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 54.0 5.52e-01 93.4% 85.3%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.69 51.0 5.46e-01 97.4% 90.8%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.69 55.0 5.41e-01 93.4% 80.0%
4275696 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.68 59.0 4.86e-01 98.7% 54.6%
3628131 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 52.0 4.79e-01 100.0% 64.0%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.42e-01 93.4% 100.0%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.94e-01 89.5% 84.6%
3583485 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.66 49.0 4.37e-01 89.5% 57.1%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.47e-01 94.7% 62.1%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 52.0 5.15e-01 90.8% 82.5%
3296140 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.64 57.0 3.50e-01 97.4% 21.1%
3627914 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.75e-01 100.0% 67.0%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 53.0 5.42e-01 100.0% 93.2%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.64 49.0 5.23e-01 90.8% 95.4%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 50.0 3.54e-01 90.8% 27.1%
572 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 54.0 4.87e-01 94.7% 75.0%
3502086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.39e-01 94.7% 85.5%
3704935 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.44e-01 89.5% 80.0%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 55.0 5.18e-01 97.4% 81.1%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 54.0 4.28e-01 100.0% 47.1%
3826545 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 56.0 5.00e-01 98.7% 88.6%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 50.0 5.23e-01 96.1% 95.7%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.03e-01 94.7% 93.8%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.40e-01 97.4% 100.0%
3310577 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 55.0 5.01e-01 97.4% 85.0%
3888395 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 53.0 5.17e-01 96.1% 98.8%
3341617 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 55.0 3.85e-01 100.0% 64.8%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 48.0 5.00e-01 90.8% 90.0%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 51.0 4.93e-01 100.0% 80.0%
4863931 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.77e-01 90.8% 88.1%
3831409 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 54.0 4.90e-01 97.4% 86.0%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.91e-01 94.7% 78.9%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 50.0 4.88e-01 89.5% 91.8%
3476336 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 51.0 5.28e-01 90.8% 100.0%
3607419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.16e-01 93.4% 68.3%
3445055 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 53.0 4.80e-01 97.4% 85.7%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 54.0 3.07e-01 100.0% 9.8%
3295687 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 53.0 4.75e-01 97.4% 87.6%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.60 47.0 5.01e-01 89.5% 98.5%
3434094 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 50.0 4.66e-01 90.8% 86.3%
3679883 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.60 50.0 4.49e-01 90.8% 69.5%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 52.0 4.29e-01 94.7% 56.9%
3367958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.15e-01 96.1% 57.4%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.44e-01 94.7% 80.0%
3672652 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.59 52.0 4.60e-01 97.4% 82.7%
3908017 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.59 49.0 4.84e-01 94.7% 86.3%
None — 0.58 51.0 3.47e-01 100.0% 40.0%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 3.73e-01 96.1% 49.5%
None — 0.58 51.0 3.89e-01 96.1% 61.2%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.58 47.0 4.03e-01 88.2% 62.5%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.57 51.0 4.47e-01 97.4% 83.6%
4012179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 3.97e-01 86.8% 72.0%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.65e-01 92.1% 91.8%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.02e-01 94.7% 63.8%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.55 48.0 3.86e-01 100.0% 49.7%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 3.78e-01 97.4% 79.4%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.55 47.0 3.76e-01 100.0% 46.9%
4256943 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.54 47.0 3.91e-01 100.0% 57.1%
3717236 220.1.1.175 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.52 42.0 3.48e-01 90.8% 69.0%
3265100 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.52 45.0 3.96e-01 97.4% 99.1%
3227147 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 2.86e-01 93.4% 48.3%
3183224 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.50 44.0 4.02e-01 97.4% 99.0%