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MH651189.1__AXQ65173.1__SEA_SCHMIDT_53__00053

Bact-Vir

MH651189.1__AXQ65173.1__SEA_SCHMIDT_53__00053

Identity

Accession:
MH651189 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.81 69.0 5.73e-01 96.0% 100.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.75 59.0 5.39e-01 86.0% 78.8%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 64.0 5.06e-01 100.0% 91.6%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 61.0 4.91e-01 96.0% 100.0%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 60.0 4.97e-01 100.0% 94.9%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.69 55.0 4.20e-01 88.0% 61.9%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 54.0 4.69e-01 94.0% 56.4%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.68 54.0 4.27e-01 90.0% 46.4%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 55.0 4.45e-01 96.0% 87.7%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.40e-01 96.0% 88.6%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 54.0 5.03e-01 94.0% 100.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.67 55.0 4.18e-01 90.0% 44.0%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 57.0 4.15e-01 98.0% 38.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.67 49.0 3.92e-01 84.0% 40.2%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 54.0 4.42e-01 100.0% 90.7%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 49.0 4.34e-01 86.0% 54.5%
2zomA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 53.0 4.36e-01 100.0% 92.5%
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.65 47.0 3.03e-01 82.0% 15.4%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 50.0 4.00e-01 90.0% 100.0%
2ii7H00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.65 51.0 4.04e-01 88.0% 51.9%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 49.0 3.58e-01 82.0% 42.5%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.33e-01 92.0% 52.6%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 52.0 4.18e-01 92.0% 47.7%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.66e-01 90.0% 83.8%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.45e-01 94.0% 97.6%
3og4B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.17e-01 94.0% 53.4%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 51.0 3.72e-01 92.0% 35.9%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 4.03e-01 92.0% 90.2%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.41e-01 96.0% 54.7%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 51.0 3.75e-01 92.0% 94.9%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.19e-01 96.0% 53.1%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.62 45.0 4.00e-01 84.0% 96.3%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.62 49.0 4.00e-01 98.0% 69.6%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 41.0 2.65e-01 72.0% 58.5%
2llzA01 3.30.70.2360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.67e-01 78.0% 91.1%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.60 47.0 4.48e-01 90.0% 85.7%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.59e-01 90.0% 40.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 47.0 4.00e-01 96.0% 60.4%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 48.0 4.09e-01 100.0% 95.9%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 44.0 3.89e-01 88.0% 50.0%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 3.48e-01 98.0% 47.8%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.58 47.0 3.83e-01 100.0% 51.8%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 3.65e-01 86.0% 94.7%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 3.47e-01 98.0% 57.7%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.56 49.0 3.59e-01 100.0% 68.1%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.22e-01 94.0% 34.8%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 3.65e-01 94.0% 51.5%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.55 46.0 4.06e-01 98.0% 79.5%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.54 41.0 3.49e-01 86.0% 48.9%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 37.0 2.76e-01 76.0% 82.9%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 39.0 3.04e-01 90.0% 91.3%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.44e-01 98.0% 19.5%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 2.52e-01 72.0% 91.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936959 304.56.1.0 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.79 67.0 5.28e-01 96.0% 97.1%
4664239 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.78 67.0 5.58e-01 98.0% 97.8%
3297748 4076.1.1.2 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.76 62.0 6.05e-01 92.0% 81.8%
3229807 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.76 64.0 5.43e-01 92.0% 57.5%
3789608 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.75 66.0 4.11e-01 100.0% 35.6%
4943651 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.73 59.0 4.72e-01 94.0% 100.0%
3218303 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.72 51.0 5.29e-01 82.0% 84.4%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.69 53.0 5.21e-01 88.0% 94.5%
3968319 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.68 59.0 4.12e-01 98.0% 35.8%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.68 54.0 3.36e-01 92.0% 45.0%
4106367 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.68 51.0 5.03e-01 84.0% 83.0%
3583468 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.67 54.0 4.35e-01 96.0% 89.1%
3285516 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.67 53.0 4.63e-01 94.0% 100.0%
4993867 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.67 52.0 4.44e-01 94.0% 91.6%
3941506 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.67 55.0 3.42e-01 100.0% 25.7%
4060964 11.2.1.36 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MAP10_N 0.66 58.0 4.05e-01 100.0% 43.6%
3176986 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.66 51.0 4.44e-01 90.0% 52.9%
3440477 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.66 54.0 4.43e-01 94.0% 66.3%
2573463 302.3.1.0 a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein 0.66 52.0 4.47e-01 94.0% 55.1%
4215974 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.65 52.0 4.81e-01 94.0% 97.1%
3385871 872.8.1.0 a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain 0.65 51.0 3.52e-01 88.0% 23.8%
3251395 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.65 52.0 3.97e-01 92.0% 45.6%
4386614 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.65 50.0 3.67e-01 90.0% 42.0%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.64 52.0 3.94e-01 96.0% 50.4%
3258059 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.64 51.0 4.56e-01 92.0% 98.7%
3923903 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.09e-01 90.0% 45.7%
3494105 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.63 52.0 4.49e-01 94.0% 61.3%
3710120 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 3.87e-01 96.0% 51.4%
3886404 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 49.0 3.84e-01 92.0% 41.6%
4108911 10.32.1.74 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cry1Ac_dom-VII 0.63 48.0 3.50e-01 84.0% 62.9%
1891842 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.61 46.0 3.77e-01 88.0% 49.1%
1429395 4056.1.1.5 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P22_portal 0.61 50.0 3.47e-01 100.0% 35.9%
5062189 304.24.1.5 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.61 47.0 4.37e-01 98.0% 100.0%
3450576 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 47.0 3.99e-01 92.0% 73.7%
4338821 221.1.1.69 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.60 47.0 3.84e-01 90.0% 46.7%
4981878 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 4.23e-01 96.0% 62.9%
1003912 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 47.0 4.00e-01 96.0% 60.4%
3399251 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 51.0 4.25e-01 98.0% 81.1%
3694526 11.1.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.59 47.0 3.42e-01 90.0% 46.0%
3437270 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 44.0 4.17e-01 92.0% 65.7%
4489784 241.12.1.1 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 0.59 46.0 3.16e-01 92.0% 24.0%
3172253 2004.1.1.212 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.59 45.0 2.75e-01 90.0% 11.9%
3970696 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 47.0 3.82e-01 98.0% 54.9%
3510942 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 45.0 4.07e-01 90.0% 97.3%
3417568 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.58 49.0 3.94e-01 98.0% 86.4%
4012054 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.48e-01 94.0% 57.1%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 45.0 3.44e-01 94.0% 89.7%
3596527 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 3.31e-01 100.0% 45.1%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.57 47.0 4.70e-01 94.0% 98.0%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 46.0 3.71e-01 94.0% 60.0%
4595348 11.1.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.57 45.0 3.42e-01 90.0% 51.5%
3493888 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.56 44.0 3.37e-01 92.0% 47.4%
3937491 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.25e-01 86.0% 45.2%
4145394 11.1.1.37 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.55 44.0 3.35e-01 96.0% 48.6%
3957598 2004.1.2.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP 0.54 47.0 3.11e-01 100.0% 24.3%