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MH651189.1__AXQ65183.1__SEA_SCHMIDT_63__00063
Bact-VirMH651189.1__AXQ65183.1__SEA_SCHMIDT_63__00063
Identity
- Accession:
- MH651189 ↗
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Taxonomy
TaxID: 2301697
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-86
Domain cluster:
rep: OP172685.1__WAX07824.1__BK687P5_00009__00009__D220-282
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23043.2 best | SH3-B_UBE2O | 22.6 | 1.60e-04 | 70.3% | 54.3% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.82 | 49.0 | 6.07e-01 | 71.6% | 93.8% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 54.0 | 6.15e-01 | 73.0% | 93.0% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 54.0 | 5.90e-01 | 94.6% | 85.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.77 | 65.0 | 6.46e-01 | 100.0% | 88.3% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 51.0 | 5.89e-01 | 73.0% | 98.1% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.72 | 51.0 | 5.49e-01 | 74.3% | 96.9% |
| 4a4kA02 | 2.30.30.1160 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 64.0 | 5.17e-01 | 100.0% | 67.7% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.68 | 55.0 | 4.78e-01 | 87.8% | 58.7% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 46.0 | 4.77e-01 | 94.6% | 90.9% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.23e-01 | 74.3% | 87.5% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 50.0 | 4.04e-01 | 93.2% | 86.8% |
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 49.0 | 3.98e-01 | 94.6% | 72.9% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 35.0 | 3.78e-01 | 74.3% | 82.8% |
| 6j5cA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.53 | 39.0 | 3.77e-01 | 78.4% | 78.3% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.52 | 35.0 | 2.95e-01 | 70.3% | 66.7% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 35.0 | 2.96e-01 | 71.6% | 43.9% |
| 1k5dB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 39.0 | 3.17e-01 | 83.8% | 56.2% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 2.88e-01 | 73.0% | 67.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287628 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 55.0 | 5.88e-01 | 71.6% | 93.8% |
| 3678872 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.78 | 56.0 | 5.66e-01 | 75.7% | 92.0% |
| 3319789 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.74 | 54.0 | 5.10e-01 | 75.7% | 75.3% |
| 4400641 | 4.1.1.397 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29622 | 0.74 | 51.0 | 4.98e-01 | 71.6% | 90.0% |
| 3591306 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 50.0 | 5.18e-01 | 70.3% | 88.6% |
| 4990538 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 55.0 | 4.57e-01 | 79.7% | 93.5% |
| 5025169 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 52.0 | 4.24e-01 | 75.7% | 90.4% |
| 4959206 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.72 | 51.0 | 4.17e-01 | 74.3% | 93.2% |
| 4982858 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 56.0 | 4.51e-01 | 82.4% | 97.8% |
| 3601070 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 49.0 | 5.26e-01 | 71.6% | 92.3% |
| 4483091 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.71 | 50.0 | 4.39e-01 | 73.0% | 64.8% |
| 3658643 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 53.0 | 4.18e-01 | 81.1% | 81.4% |
| None | — | 0.68 | 50.0 | 3.30e-01 | 77.0% | 24.8% | |
| 4927277 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.68 | 48.0 | 3.16e-01 | 74.3% | 20.0% |
| 4125269 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.68 | 48.0 | 3.18e-01 | 74.3% | 20.0% |
| 552 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.68 | 55.0 | 4.78e-01 | 87.8% | 58.7% |
| 3696171 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 61.0 | 3.76e-01 | 97.3% | 34.5% |
| 3827886 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.67 | 56.0 | 5.49e-01 | 91.9% | 88.7% |
| 3339162 | 4.1.1.330 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O | 0.66 | 59.0 | 4.83e-01 | 97.3% | 83.1% |
| 5055781 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.65 | 45.0 | 2.98e-01 | 73.0% | 19.4% |
| 3595169 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 5.29e-01 | 89.2% | 91.4% |
| 3937006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 53.0 | 5.21e-01 | 90.5% | 96.2% |
| 3597361 | 4.23.1.0 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like | 0.62 | 44.0 | 3.70e-01 | 75.7% | 63.8% |
| 4986992 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.60 | 42.0 | 2.57e-01 | 74.3% | 12.2% |
| 4930398 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 42.0 | 4.34e-01 | 74.3% | 100.0% |
| 3278081 | 2.4.1.15 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2, CysA_C_terminal | 0.59 | 40.0 | 3.41e-01 | 70.3% | 45.8% |
| 3271407 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.76e-01 | 95.9% | 80.0% |
| 4982228 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.58 | 47.0 | 3.58e-01 | 90.5% | 98.9% |
| 3394789 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 49.0 | 4.41e-01 | 100.0% | 81.8% |
| 3990088 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.58 | 38.0 | 2.91e-01 | 98.6% | 28.6% |
| 3182097 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 43.0 | 4.60e-01 | 94.6% | 90.8% |
| 3604480 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.57 | 46.0 | 3.57e-01 | 90.5% | 96.0% |
| 3740784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 50.0 | 4.80e-01 | 100.0% | 85.9% |
| 5026406 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.57 | 46.0 | 3.51e-01 | 90.5% | 92.2% |
| 3226909 | 331.15.1.0 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 | 0.57 | 40.0 | 3.99e-01 | 73.0% | 77.3% |
| 5070693 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.56 | 44.0 | 3.48e-01 | 90.5% | 93.1% |
| 3659855 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 39.0 | 3.85e-01 | 75.7% | 98.8% |
| 5029258 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 4.16e-01 | 94.6% | 95.0% |
| 4338451 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.53 | 37.0 | 3.16e-01 | 73.0% | 44.8% |
| 4085451 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 36.0 | 3.25e-01 | 74.3% | 49.1% |
| 3937433 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.52 | 40.0 | 3.47e-01 | 86.5% | 93.6% |
| 3235763 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.52 | 41.0 | 3.99e-01 | 85.1% | 82.5% |
| 3703130 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 39.0 | 3.92e-01 | 89.2% | 80.0% |
| 3710518 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.51 | 35.0 | 2.66e-01 | 71.6% | 84.2% |
| 3934889 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.51 | 39.0 | 3.38e-01 | 86.5% | 96.0% |