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MH669006.1__AXQ61289.1__SEA_LIBERTYBELL_48__00048
Bact-VirMH669006.1__AXQ61289.1__SEA_LIBERTYBELL_48__00048
Identity
- Accession:
- MH669006 ↗
- Kingdom:
- phage
Quality
64.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-244
Domain cluster:
rep: MN204492.1__QEQ93551.1__SEA_GIRLPOWER_52__00052__D152-236
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 39.0 | 3.58e-01 | 84.3% | 47.7% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 52.0 | 3.91e-01 | 100.0% | 57.3% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 33.0 | 3.74e-01 | 81.9% | 77.8% |
| 5d8nA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 42.0 | 3.28e-01 | 81.9% | 36.7% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 37.0 | 3.61e-01 | 71.1% | 75.8% |
| 3ghjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 35.0 | 3.19e-01 | 84.3% | 46.6% |
| 5z62B02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 38.0 | 3.28e-01 | 74.7% | 70.6% |
| 4ak8A00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.54 | 42.0 | 3.69e-01 | 88.0% | 76.2% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 41.0 | 3.43e-01 | 83.1% | 62.6% |
| 4lpqA02 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.51 | 38.0 | 3.33e-01 | 79.5% | 95.3% |
| 4i1kA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 41.0 | 3.73e-01 | 91.6% | 90.7% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 34.0 | 3.08e-01 | 85.5% | 46.4% |
| 1rybA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.51 | 37.0 | 2.95e-01 | 84.3% | 35.5% |
| 1ty0B01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 35.0 | 3.08e-01 | 74.7% | 66.7% |
| 1q33A02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 38.0 | 3.10e-01 | 83.1% | 71.3% |
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 32.0 | 3.28e-01 | 90.4% | 66.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045709 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 38.0 | 3.04e-01 | 80.7% | 31.2% |
| 1886700 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.62 | 39.0 | 4.54e-01 | 85.5% | 93.0% |
| 4567626 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 43.0 | 3.06e-01 | 84.3% | 25.3% |
| 4647833 | 2004.1.1.171 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 | 0.58 | 51.0 | 3.36e-01 | 98.8% | 24.7% |
| 4946163 | 3414.1.1.12 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › NMD3 | 0.57 | 44.0 | 3.97e-01 | 83.1% | 91.3% |
| 3280391 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.57 | 35.0 | 3.83e-01 | 85.5% | 74.3% |
| 5000455 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.57 | 44.0 | 3.91e-01 | 85.5% | 75.2% |
| 4149038 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.56 | 40.0 | 3.18e-01 | 85.5% | 33.9% |
| 4932517 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.56 | 44.0 | 4.29e-01 | 83.1% | 96.7% |
| 3783380 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.55 | 39.0 | 2.83e-01 | 84.3% | 24.7% |
| 3610594 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 46.0 | 2.82e-01 | 90.4% | 47.3% |
| 4032137 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 33.0 | 3.77e-01 | 83.1% | 85.0% |
| 3400611 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.54 | 40.0 | 3.06e-01 | 96.4% | 33.0% |
| 3483288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 42.0 | 3.65e-01 | 85.5% | 74.6% |
| 5021435 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 36.0 | 3.34e-01 | 71.1% | 82.6% |
| 3283415 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.53 | 32.0 | 3.64e-01 | 80.7% | 81.7% |
| 3183677 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.53 | 42.0 | 3.85e-01 | 85.5% | 87.3% |
| 3387628 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.53 | 36.0 | 3.52e-01 | 71.1% | 73.7% |
| 4583055 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.52 | 38.0 | 3.12e-01 | 89.2% | 40.0% |
| 3255282 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.52 | 47.0 | 3.52e-01 | 100.0% | 57.6% |
| 4637532 | 2003.1.5.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 | 0.52 | 41.0 | 2.92e-01 | 86.7% | 35.8% |
| 3702578 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.52 | 41.0 | 2.99e-01 | 85.5% | 65.8% |
| 3784616 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 32.0 | 3.72e-01 | 81.9% | 88.3% |
| 3741511 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.51 | 41.0 | 3.02e-01 | 85.5% | 35.5% |
| 3929338 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.82e-01 | 85.5% | 95.0% |
| 4116624 | 2003.1.5.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 | 0.50 | 40.0 | 2.85e-01 | 86.7% | 37.7% |
| 3286158 | 211.1.1.11 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 | 0.50 | 33.0 | 3.81e-01 | 86.7% | 100.0% |
D2
medium
residues 9-63