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MH669006.1__AXQ61305.1__SEA_LIBERTYBELL_64__00064

Bact-Vir

MH669006.1__AXQ61305.1__SEA_LIBERTYBELL_64__00064

Identity

Accession:
MH669006 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-106
PDB
D2 medium residues 109-155
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 59.0 6.02e-01 91.5% 80.4%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.79 61.0 4.43e-01 85.1% 31.5%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.77 59.0 4.69e-01 85.1% 42.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 69.0 5.64e-01 97.9% 60.5%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.74 57.0 4.42e-01 87.2% 39.8%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.73 58.0 4.86e-01 91.5% 55.3%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.72 55.0 4.64e-01 83.0% 84.8%
2wcjA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.71 61.0 4.37e-01 100.0% 85.1%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.70 54.0 4.50e-01 89.4% 46.0%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.70 53.0 3.83e-01 85.1% 28.5%
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.70 56.0 5.36e-01 93.6% 75.0%
2fozA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.70 54.0 3.22e-01 85.1% 12.1%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 58.0 4.87e-01 95.7% 69.0%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.68 52.0 4.82e-01 83.0% 71.7%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.68 57.0 5.83e-01 100.0% 100.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.68 59.0 3.68e-01 100.0% 27.7%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.67 44.0 4.24e-01 72.3% 59.3%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 53.0 4.27e-01 97.9% 84.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.66 50.0 3.99e-01 93.6% 40.0%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.66 49.0 3.99e-01 85.1% 66.3%
2ja2A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 48.0 3.81e-01 78.7% 86.7%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.66 53.0 4.46e-01 95.7% 85.4%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.26e-01 78.7% 68.7%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.64 49.0 3.90e-01 87.2% 47.6%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.64 46.0 3.73e-01 80.9% 38.4%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.63 52.0 5.04e-01 91.5% 84.6%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 46.0 4.26e-01 78.7% 78.7%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.62 53.0 4.37e-01 100.0% 72.5%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.62 49.0 3.89e-01 87.2% 66.3%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.61 45.0 4.63e-01 91.5% 100.0%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.61 44.0 4.36e-01 80.9% 73.1%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.61 42.0 3.51e-01 72.3% 40.0%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.61 49.0 3.70e-01 95.7% 55.4%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.61 42.0 3.79e-01 78.7% 54.8%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.60 50.0 3.50e-01 93.6% 32.7%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 49.0 3.51e-01 91.5% 75.9%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.60 42.0 3.59e-01 70.2% 67.1%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.60 40.0 3.92e-01 74.5% 64.7%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 44.0 3.47e-01 80.9% 69.3%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 43.0 4.06e-01 80.9% 63.8%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 48.0 3.95e-01 100.0% 85.7%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.59 43.0 4.09e-01 100.0% 64.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 47.0 3.40e-01 100.0% 92.1%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.55 40.0 3.96e-01 78.7% 80.8%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.54 43.0 4.18e-01 95.7% 92.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.54 43.0 3.91e-01 89.4% 80.3%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.53 42.0 3.47e-01 85.1% 52.2%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 41.0 3.12e-01 83.0% 35.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.53 37.0 3.47e-01 74.5% 57.4%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.52 38.0 3.67e-01 85.1% 100.0%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 41.0 3.72e-01 97.9% 81.7%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 2.31e-01 93.6% 81.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029728 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.83 70.0 4.74e-01 91.5% 28.4%
3741613 101.1.2.73 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.82 66.0 4.54e-01 91.5% 27.3%
3407969 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.81 69.0 6.57e-01 97.9% 81.8%
4107264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 59.0 4.42e-01 83.0% 33.9%
5014028 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.77 58.0 3.70e-01 83.0% 17.0%
3262801 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.76 66.0 4.85e-01 97.9% 40.0%
3736680 592.1.1.6 alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.74 59.0 5.00e-01 97.9% 52.5%
4995676 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 57.0 5.01e-01 91.5% 57.1%
3588797 4084.1.1.0 alpha bundles › ChaB-like › ChaB-like › ChaB-like 0.73 57.0 5.24e-01 91.5% 64.6%
3623929 592.1.1.5 alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26084 0.73 61.0 4.97e-01 97.9% 50.0%
4990528 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.70 58.0 4.80e-01 97.9% 51.8%
185065 6040.1.1.1 alpha bundles › DUF3235 › DUF3235 › DUF3235 › Rpf1_C 0.70 54.0 4.50e-01 89.4% 46.0%
3231906 397.7.1.4 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX 0.70 52.0 5.36e-01 85.1% 91.1%
3788827 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.69 60.0 5.44e-01 100.0% 78.5%
4936475 103.4.1.31 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF30410 0.69 56.0 5.05e-01 91.5% 73.8%
3394799 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.68 56.0 3.47e-01 93.6% 36.8%
3608485 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.67 47.0 3.48e-01 72.3% 36.5%
5077460 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 50.0 4.40e-01 78.7% 69.1%
3580700 148.1.3.10 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.67 56.0 4.38e-01 95.7% 48.6%
4958192 3718.1.1.34 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › PF26161 0.67 51.0 4.38e-01 91.5% 51.2%
3438464 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.67 53.0 5.24e-01 93.6% 84.0%
3737986 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 51.0 3.14e-01 87.2% 13.5%
4216245 4082.1.1.1 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.66 45.0 4.67e-01 72.3% 82.2%
3682257 284.1.3.9 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › WLM 0.64 49.0 4.05e-01 85.1% 45.6%
5001813 5049.1.3.1 alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Na(+)-translocating NADH-quinone reductase subunit B › NQR2_RnfD_RnfE 0.64 53.0 3.34e-01 100.0% 18.3%
3808261 3826.1.1.27 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 0.63 48.0 3.89e-01 80.9% 47.1%
3640538 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.63 51.0 4.54e-01 91.5% 70.0%
3594525 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.63 46.0 3.66e-01 80.9% 64.0%
5032477 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.63 50.0 3.90e-01 91.5% 46.4%
3279167 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.62 55.0 3.51e-01 100.0% 22.0%
5002701 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.62 51.0 3.99e-01 95.7% 44.5%
3657184 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.61 51.0 3.90e-01 93.6% 55.5%
3798232 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 50.0 4.07e-01 89.4% 51.1%
3721541 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 46.0 3.74e-01 89.4% 43.0%
4097875 3712.1.1.2 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › DUF412 0.59 43.0 3.42e-01 78.7% 39.0%
3739367 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.59 47.0 3.44e-01 89.4% 31.1%
3395959 5086.1.1.166 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PEX11 0.59 44.0 3.44e-01 83.0% 38.9%
4031490 632.2.1.5 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.59 49.0 4.20e-01 93.6% 85.3%
3941001 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.58 41.0 2.55e-01 74.5% 11.7%
4501780 310.2.1.5 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF842 0.58 45.0 3.43e-01 91.5% 88.0%
4027121 109.4.1.27 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 0.55 41.0 3.05e-01 93.6% 26.2%
3451236 397.4.1.3 few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 0.55 38.0 3.90e-01 83.0% 84.4%